Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02281 ATGGCTCTACCTGTTAACCTCGTACTCTCGTACTTCCTCGTCCTCCACACACTCTCTGCCATTGCAGACCAAACCTCCGACAACCTTTCCCTCCTTTCATTCAAACAGGCTCTCCAAAACCCTCACGTCCTCACCGTCTGGCACCCCGCCACCCCGCACTGCCACTGGCTCGGCGTCACCTGCCAACTCGGCCGAGTCACCTCGCTCTCTCTTCCCTCTCGCAACCTCAGAGGAACActctctccctcactcttctctctttcctcgctctctctcctcAACCTCCGCGACAACCACCTCTCCGGCGAGATCCCCGCCGAGCTCGGGGGGTTGCTTCAGCTCCACACTCTCCGACTCGGCTCCAACTCGCTCGCCGGAAAAATCCCGCCGGTGGTTGGTCACCTCACGAGCCTCCAAACTCTCGACCTCTCCGGGAACTCGCTCGCCGGAGAAGTGCCGGAGAGCGTCGGGAACTTGACCCGGCTTGAGTTTCTCGACCTGAGCAACAATCTTTTATCCGGTGCTCTTCCGGTGAGTCTGTTCGTCGGAGCAAAGTCTTTGATTTCCATTGATATCTCGAACAACTCGTTTTCCGGCGCGCTGCCGCCGGAAATCGGGAATTGGCGGAACCTCAGTGCCCTTTACGTGGGGATTAACAAGCTGTCTGGGACATTGCCGAGGGAAATTGGGTTGCTTTCAAAACTTGAAATTTTGTACTCCCCTTCCTGTTCCATCGAGGGTCCTTTGCCTGAGGAAATGGCGAAGCTGAAATCGTTGACCAAGCTTGACCTTTCTTACAACCCCTTGAGGTGTTCGATTCCGAGGTTCATCGGGGAGTTGGAGAGTTTGGAAATTTTGGACCTTGTGTTTTCCCAGCTTAATGGGTCAGTGCCAGCTGAGCTTGGGAATTGTAAGAATCTGAGGTCTGTCATGCTTTCTTTCAATTCACTTTCTGGGTCACTGCCTGAGGAACTTTCTGAGCTTCCTATGTTAACCTTTTCTGCTGAGAAGAATCAGCTTCACGGGCCTTTGCCTTCTTGGCTAGGAAAGTGGGCCAATGTTGATTCTCTCTTGCTTTCTGCTAACCGTTTATCTGGGGTGATTCCTCCTGAGCTTGGGAACTGTTCTGTGATGGAGCACCTCAGTTTGAGCAGCAATTTGCTGACAGGTCCCATTCCTTGGGAGCTTTGTAATGCTGCCTCACTTTTGGAGGTTGATCTTGATGACAACTTCCTCTCTGGTACTATCGACAATGTTTTTGTTAAGTGTAAGAACCTTACTCAGTTGGTTTTGATGAATAATCAAATTGTTGGTTCTATACCTGAGTACCTTTCTGAGCTTCCCTTGATGGTGCTGGACCTTGATTCTAACAATTTTAGTGGGAAAATACCTTCTGGTCTGTGGAATTCTTCAACTCTGATGGAATTCTCTGCTGCTAATAACCGTTTGGAGGGTTCTCTTCCTATGGAGATTGGGAATGCGGTTATGCTGGAGAGACTTGTTCTTAGCAATAATCGCCTGACAGGTGCTATTCCTAAGGAAATTGGAAGTCTCTTAAGCCTTTCAGTTCTTAATTTGAATGGGAATATGCTTGAAGGGAATATTCCAACTGAGCTTGGTGATTGCACTTCCCTTACTACGCTGGACCTTGGAAACAATCAGCTGAATGGGTCTATTCCTGAGAAACTGGTGGAACTGAGCCAGCTGCAGTGCCTAGTTCTTTCTCACAATAATCTGTCTGGGGCTGTTCCTGCCAAGAAATCGTCGTATTTTCGACAACTTAGCATCCCTGACTTGAGCTTTGTTCAGCACCTTGGTGTGTTTGATCTTTCATATAATAGATTGTCTGGCCCCATACCTGATGAACTTGGGAACTGTGTAGTGGTTGTGGATCTCTTAGTCAGCAACAACATGCTTTCTGGGAGCATTCCCAAATCACTCTCACGCTTGACGAATCTTACAACTTTGGATTTATCTGGCAACTTGTTGTCGGGTTCCATTCCACCAGAGCTTGGAGGTGCCCTCAAACTCCAGGGTTTGTATCTGGGACAGAATCAGCTATCAGGTGCCATCCCTGAAAGCTTCGGCAAGTTGAGTAGTTTGGTGAAGCTGAATTTGACAGGAAATAAGCTTTCTGGACCAATTCCGGTTAGTTTTGGGAACATGAAGGGGTTGACTCACTTGGACTTGAGCTGTAATGAGCTCAGTGGCGAGCTTCCATCCTCTCTTTCAGGAGTGCAAAGCCTTGTTGGGCTTTACGTGCAGAATAATAAGCTTTCTGGCCAAGTGGGGGACCTCTTCTCAAACCCCATGACATGGAGGATTGAGACAGTGAATTTAAGTGTTAATTTCTTCAATGGGAACTTGCCGCCATCTTTGGGAAATCTTTCTTACTTGACAAATTTGGATCTTCATCGAAATATGTTGACAGGAGAGATTCCTTTAGACCTCGGGGATCTAATGCAACTGGAGTATTTTGATGTTTCAGGTTGGAAGGGCCCATACCAAAAAATGGCTAGTGGCATTGGCAGATCAGCATTGGATAATGCATGGAGGCTAGCTGGAATTGCCGTTGCACTCACATTACTAACTCTAAGCATTGCTTTTGTTCTACATAGATGGATTACCAAGAGGCAAAGTGATCCTGAGGAGTTTGAGGAGCGCAAACTGAACAGTTATGTGGATCACAATCTTTATTTCTTAAGCAGCAGCAGATCAAAGGAACCTCTGAGTATCAATGTTGCAATGTTTGAGCAGCCTCTCCTGAAATTAACTTTGGTGAACATCCTTGAAGCTACTGACAACTTCAGCAAGGCAAACATAATTGGAGATGGAGGTTTTGGAACTGTGTACAAGGCCACTTTACCTAATGGAAAAACAGTGGCTGTGAAGAAGCTTAGCGAGGCTAAAACGCAGGGTCACCGCGAGTTCATGGCTGAAATGGAAACCTTAGGCAAGGTGAAGCATCAAAATCTCGTGGCACTGCTTGGATATTGCTCAATAGGTGAGGAGAAACTCCTTGTTTATGAATACATGGTAAATGGGAGCTTAGATCTTTGGTTGAGGAATAAGACTGGGGCCCTTGAAATCCTTGACTGGAACAAACGTTACAAAATTGCAACTGGCGCAGCTCGAGGATTGGCTTTCCTTCATCATGGTTTCATACCCCACATCATTCATAGGGATGTTAAAGCCAGCAACATCTTACTGAATGAAGACTTTGAGCCAAAGGTTGCAGACTTTGGACTGGCAAGACTGATCAGTGCTTGTGAGACTCATATCACCACTGATATTGCTGGAACGTTTGGTTACATTCCACCAGAGTATGGGCAGAGTGGGAGATCCACAACAAGAGGAGATGTCTACAGTTTCGGTGTCATTTTACTTGAACTTGTGACTGGTAAAGAGCCAACAGGACCAGATTTTAAGGAGATCGAAGGTGGTAACTTAGTTGGATGGGTTAGTCAGAAGATCAAGAAGGGGCAGGCTGCTGATGTTCTTGATCCAACAGTTCTTGATGCTGACTCAAAGCAGATGATGCTTCAAATGCTGCAAATTGCTTGTGTGTGCATATCTGATAATCCTGCAAGCAGGCCTAACATGCTTCAAGTGCACAAATTCTTGAAGGGGATCAGGGGAGAGTAG 3645 0.4636 MALPVNLVLSYFLVLHTLSAIADQTSDNLSLLSFKQALQNPHVLTVWHPATPHCHWLGVTCQLGRVTSLSLPSRNLRGTLSPSLFSLSSLSLLNLRDNHLSGEIPAELGGLLQLHTLRLGSNSLAGKIPPVVGHLTSLQTLDLSGNSLAGEVPESVGNLTRLEFLDLSNNLLSGALPVSLFVGAKSLISIDISNNSFSGALPPEIGNWRNLSALYVGINKLSGTLPREIGLLSKLEILYSPSCSIEGPLPEEMAKLKSLTKLDLSYNPLRCSIPRFIGELESLEILDLVFSQLNGSVPAELGNCKNLRSVMLSFNSLSGSLPEELSELPMLTFSAEKNQLHGPLPSWLGKWANVDSLLLSANRLSGVIPPELGNCSVMEHLSLSSNLLTGPIPWELCNAASLLEVDLDDNFLSGTIDNVFVKCKNLTQLVLMNNQIVGSIPEYLSELPLMVLDLDSNNFSGKIPSGLWNSSTLMEFSAANNRLEGSLPMEIGNAVMLERLVLSNNRLTGAIPKEIGSLLSLSVLNLNGNMLEGNIPTELGDCTSLTTLDLGNNQLNGSIPEKLVELSQLQCLVLSHNNLSGAVPAKKSSYFRQLSIPDLSFVQHLGVFDLSYNRLSGPIPDELGNCVVVVDLLVSNNMLSGSIPKSLSRLTNLTTLDLSGNLLSGSIPPELGGALKLQGLYLGQNQLSGAIPESFGKLSSLVKLNLTGNKLSGPIPVSFGNMKGLTHLDLSCNELSGELPSSLSGVQSLVGLYVQNNKLSGQVGDLFSNPMTWRIETVNLSVNFFNGNLPPSLGNLSYLTNLDLHRNMLTGEIPLDLGDLMQLEYFDVSGWKGPYQKMASGIGRSALDNAWRLAGIAVALTLLTLSIAFVLHRWITKRQSDPEEFEERKLNSYVDHNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVNILEATDNFSKANIIGDGGFGTVYKATLPNGKTVAVKKLSEAKTQGHREFMAEMETLGKVKHQNLVALLGYCSIGEEKLLVYEYMVNGSLDLWLRNKTGALEILDWNKRYKIATGAARGLAFLHHGFIPHIIHRDVKASNILLNEDFEPKVADFGLARLISACETHITTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVSQKIKKGQAADVLDPTVLDADSKQMMLQMLQIACVCISDNPASRPNMLQVHKFLKGIRGE 1214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02281 1214 SUPERFAMILY L domain-like 28 332 - -
Cca02g02281 1214 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 335 420 - -
Cca02g02281 1214 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 421 754 - -
Cca02g02281 1214 SUPERFAMILY Protein kinase-like (PK-like) 917 1208 IPR011009 -
Cca02g02281 1214 Gene3D Phosphorylase Kinase; domain 1 899 1011 - -
Cca02g02281 1214 Pfam Leucine rich repeat 651 711 IPR001611 GO:0005515
Cca02g02281 1214 Pfam Leucine rich repeat 497 555 IPR001611 GO:0005515
Cca02g02281 1214 Pfam Leucine rich repeat 113 172 IPR001611 GO:0005515
Cca02g02281 1214 Pfam Leucine rich repeat N-terminal domain 26 61 IPR013210 -
Cca02g02281 1214 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1058 1070 IPR008271 GO:0004672|GO:0006468
Cca02g02281 1214 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 871 1214 - -
Cca02g02281 1214 PRINTS Leucine-rich repeat signature 162 175 - -
Cca02g02281 1214 PRINTS Leucine-rich repeat signature 650 663 - -
Cca02g02281 1214 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 774 828 - -
Cca02g02281 1214 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 103 314 - -
Cca02g02281 1214 Pfam Protein tyrosine and serine/threonine kinase 939 1208 IPR001245 GO:0004672|GO:0006468
Cca02g02281 1214 SMART LRR_sd22_2 159 180 - -
Cca02g02281 1214 SMART LRR_sd22_2 423 446 - -
Cca02g02281 1214 SMART LRR_sd22_2 256 282 - -
Cca02g02281 1214 SMART LRR_sd22_2 722 748 - -
Cca02g02281 1214 SMART LRR_sd22_2 542 568 - -
Cca02g02281 1214 SMART LRR_sd22_2 650 665 - -
Cca02g02281 1214 SMART LRR_sd22_2 135 158 - -
Cca02g02281 1214 Pfam Leucine Rich Repeat 725 745 IPR001611 GO:0005515
Cca02g02281 1214 Pfam Leucine Rich Repeat 258 279 IPR001611 GO:0005515
Cca02g02281 1214 ProSitePatterns Protein kinases ATP-binding region signature. 942 965 IPR017441 GO:0005524
Cca02g02281 1214 Gene3D Transferase(Phosphotransferase) domain 1 1012 1214 - -
Cca02g02281 1214 ProSiteProfiles Protein kinase domain profile. 936 1208 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02281 1214 SUPERFAMILY L domain-like 336 600 - -
Cca02g02281 1214 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 774 828 - -
Cca02g02281 1214 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 103 314 - -
Cca02g02281 1214 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 335 420 - -
Cca02g02281 1214 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 421 754 - -
Cca02g02281 1214 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 871 1214 - -
Cca02g02281 1214 SUPERFAMILY L domain-like 595 831 - -
Cca02g02281 1214 Gene3D Ribonuclease Inhibitor 181 332 IPR032675 -
Cca02g02281 1214 Gene3D Ribonuclease Inhibitor 592 832 IPR032675 -
Cca02g02281 1214 Gene3D Ribonuclease Inhibitor 333 591 IPR032675 -
Cca02g02281 1214 Gene3D Ribonuclease Inhibitor 24 180 IPR032675 -
Cca02g02281 1214 SMART serkin_6 936 1208 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02281 1214 SMART LRR_typ_2 722 746 IPR003591 -
Cca02g02281 1214 SMART LRR_typ_2 650 674 IPR003591 -
Cca02g02281 1214 SMART LRR_typ_2 159 183 IPR003591 -
Cca02g02281 1214 SMART LRR_typ_2 796 820 IPR003591 -
Cca02g02281 1214 SMART LRR_typ_2 135 158 IPR003591 -
Cca02g02281 1214 SMART LRR_typ_2 87 111 IPR003591 -
Cca02g02281 1214 SMART LRR_typ_2 698 721 IPR003591 -
Cca02g02281 1214 SMART LRR_typ_2 256 280 IPR003591 -
Cca02g02281 1214 SMART LRR_typ_2 518 542 IPR003591 -
Cca02g02281 1214 SMART LRR_typ_2 602 626 IPR003591 -
Cca02g02281 1214 SMART LRR_typ_2 543 566 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02281 Cca-Chr2 43317213 43321016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02281 21 1211 Receptor kinase-like Gene Family AT5G07280 62.000 0.0 1420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Cca02g02281 PK_Tyr_Ser-Thr 3.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02281 - - gmx:100780446 2065.43