Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02280 ATGCCTCCGCCGCTCCAACGCAACAACGCCCATTCCACCACTCTCCGATCCCTTCCCAcgccctttctcgccaagacctaccacctcgtcgacgatcacaccaccgaccacgtcatttcatggaaccacaccggatcatccttcatcgtctggaacactgccgttttcgccaccgatttccttcctaaatatttcaagcacaacaacttctccagcttcgttcgccaactcaacacttatGGTTTCAGAAAAGTAGTGCCTCATCGTTGGGAATTCTCCAACGACTCTTTCCGTAGAGGCCACAAACGTCTTCTCTGCGAAATTCAGCGACGGAAGATCCTTTCGCCGTCGCCGCCGCTTCCTGCGATTCCGATCGTTTCACCGTCGAACTCGTCGCCGGCGGCGCTGTTGGACGAAAACGAGAGACTCAGAAAGGAGAATGTTCTGTTGACGAAGGAATTGGAGGAGATGAAATCACTCTGCAACAATATATTTAATCTGATGTCGAATTACGCAAACGGTCAggcggacggcggtgcggcggcggcgAAGACGCTTGGTTTGATGCCGGCGAAGCGGTGCTCCGGCGAGGAGGAGATGAATCCGAAGCTGTTTGGAGTGGCGATTGGGACGAAGCGAGGGAGAGAGGAGTATGATAGGGTTCTGAGTGTTGATGATGGGTCGTTCTATGTGGAGGTGAAATCTGAACCGTTAGATTTGGCGAGACATGGCGAAAATAGAAAAAGTGGTGGGTGA 756 0.3757 MPPPLQRNNAHSTTLRSLPTPFLAKTYHLVDDHTTDHVISWNHTGSSFIVWNTAVFATDFLPKYFKHNNFSSFVRQLNTYGFRKVVPHRWEFSNDSFRRGHKRLLCEIQRRKILSPSPPLPAIPIVSPSNSSPAALLDENERLRKENVLLTKELEEMKSLCNNIFNLMSNYANGQADGGAAAAKTLGLMPAKRCSGEEEMNPKLFGVAIGTKRGREEYDRVLSVDDGSFYVEVKSEPLDLARHGENRKSGG 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02280 251 Pfam HSF-type DNA-binding 22 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca02g02280 251 PRINTS Heat shock factor (HSF) domain signature 22 45 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca02g02280 251 PRINTS Heat shock factor (HSF) domain signature 60 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca02g02280 251 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca02g02280 251 SUPERFAMILY "Winged helix" DNA-binding domain 19 111 IPR036390 -
Cca02g02280 251 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 128 246 - -
Cca02g02280 251 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 10 118 - -
Cca02g02280 251 Coils Coil 140 160 - -
Cca02g02280 251 Gene3D - 15 112 IPR036388 -
Cca02g02280 251 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 118 IPR027725 -
Cca02g02280 251 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 128 246 IPR027725 -
Cca02g02280 251 SMART hsfneu3 18 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca02g02280 251 ProSitePatterns HSF-type DNA-binding domain signature. 61 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02280 Cca-Chr2 43311604 43312764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02280 2 217 HSF AT5G62020 48.669 5.79e-75 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Cca02g02280 HSF_DNA-bind 5.7e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02280 K09419 - gmx:100808202 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02280 02 43311604 43312764 Cca02g02280 02 43311604 43312764 ECH
Cca08g00620 08 11027111 11028981 Cca02g02280 02 43311604 43312764 PCT