Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02269 ATGGGTAAAGCACCTTGCTGTGAGAAACATGGAGTCAGAAGGGGAGCTTGGACCCCTGAAGAAGACCAAGCTTTGGTTCACTACATCAACAAACATGGCCATGGAAGTTGGCGTACTCTCCCCAAGCATGCAGGTCTTCTACGATGTGGGAAAAGTTGTCGGCTTCGGTGGATAAACTATCTTCGCCCTGGCATCAAGCGTGGCCCATTTACTAATGAAGAAGAAAGTACAATTGTTCAACTTCATGGCATGCTTGGCAACAGGTGGGCTGCTATAGCATCCCAACTACCTGGAAGAACAGACAATGAGATTAAGAATTATTGGAACACCCATTTAAAGAAGCGCCTCGTTGGACCATCTCATTCCCTAAGAGCAAAGCAACCATGTGTCATTCCTGATTTAACGATTATCAAGTCCGAATCTCCTTCAACGCGTCACATGGTACAATGGGAAAGTGTGAGAGTTGAGGCAGAGGCAAGGTTGTCAATGGAATCCTTGTTGATTAATTCATGGCCAACGACTAAAACATGCTCTGATCACTTTCTTCAACTTTGGCATTCTGAGGTTGGACAGTCATTTCGCATGCTCAAGGGAAAGGAAGGAGTACTGTGTCAAAGTTGTGTTTCACAACCATCATCCTCATCAAAATTGGAGTCTTGTTCAGATGAGTCATTGCAGGTGAAAAACACTGGAACCAGTAGTTGCAATCCAAATCTTGAGGATGTGAACATAATTCATGAACAAACAAGTAGCTACAAACCAAAGCTTGATGATGACACAGCAGGGTCAGAGTCTGGCAATTATGAATTTCTTGATATTTCTGATTCTTCACTAAAGCACCTACTAGATATGCATGATAGTGATATAGGATTCTTGGGACAGAATGGCAATTTCCTAAATCTCCTCGATGGTACATATGACTAA 924 0.4297 MGKAPCCEKHGVRRGAWTPEEDQALVHYINKHGHGSWRTLPKHAGLLRCGKSCRLRWINYLRPGIKRGPFTNEEESTIVQLHGMLGNRWAAIASQLPGRTDNEIKNYWNTHLKKRLVGPSHSLRAKQPCVIPDLTIIKSESPSTRHMVQWESVRVEAEARLSMESLLINSWPTTKTCSDHFLQLWHSEVGQSFRMLKGKEGVLCQSCVSQPSSSSKLESCSDESLQVKNTGTSSCNPNLEDVNIIHEQTSSYKPKLDDDTAGSESGNYEFLDISDSSLKHLLDMHDSDIGFLGQNGNFLNLLDGTYD 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02269 307 CDD SANT 69 112 IPR001005 -
Cca02g02269 307 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 296 - -
Cca02g02269 307 CDD SANT 16 61 IPR001005 -
Cca02g02269 307 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Cca02g02269 307 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca02g02269 307 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca02g02269 307 SMART sant 13 63 IPR001005 -
Cca02g02269 307 SMART sant 66 114 IPR001005 -
Cca02g02269 307 Gene3D - 14 66 - -
Cca02g02269 307 Gene3D - 69 116 - -
Cca02g02269 307 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 296 - -
Cca02g02269 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca02g02269 307 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca02g02269 307 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Cca02g02269 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02269 Cca-Chr2 43218586 43220950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02269 1 295 MYB Transcription Factor Family AT3G61250 51.325 1.88e-95 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca02g02269 Myb_DNA-binding 9.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02269 K09422 - gmx:100782075 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02269 02 43218586 43220950 Cca02g02269 02 43218586 43220950 ECH