Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02256 ATGGTTAGCCAAAGGCAGCGACTCGCTCGTAAGCGATTCAAAGCAGAGCACCCCGAGCTCTTTCCAAAGCCCGAGCCCACGCCCCCAAAAGACCCTGACAAGAAAAAGAAGAAGAAAAACAGCGCCTTCAAGCGCAAAAGGCCCGACTCAAAGCCCGGCTCCAGGAAACGCCTTCTCCGAGTCCCCGGCATGAAGCCCGGCGATACCTGTTTCATCTGCAAGGCCGTTGACCACATCGCCAAGCTCTGTCCCCAAAAAGCCGAATGGGAGAAAAACAAGATTTGTTTGCGGTGTCGACGACGCGGTCACAGGGCTAAGAATTGCCCTGCGGTGCAAGATGCCGCCAATGATGGCAAGTATTGTTATAATTGCGGGGAAACTGGTCACTCTCTCTCACAATGTCCGCACCCTCTTGAACAAGGAGGGACAAAGTTTGCTGAGTGCTTTGTCTGTAATCAACGTGGACACTTGAGTAAAAACTGTCCTCAAAATACTCATGGCATTTATCCAAAGGGTGGTTCTTGTAAAATATGTGGTGGTGTGACACATTTGGCAAGGGATTGTCCAGACAAAGGGAAGAAAGGATTTGTTGCTGCTAATGGGCCTTTTGATGGATCGATGAGAACAGAAGTAAGACCCTGTGGTCAGGTTACCAAATTTATCAGCGGGGATGATATTGAAGATGACTTCATGGCAGATGACATGCATAGTGCAGACAAGAAAAAGTCAGCAAAGTCAACAGATGGCCATGTAAAACCAAAGAAGAAGGGTCCTAAAGTTGTGAACTTTAATTGA 795 0.4818 MVSQRQRLARKRFKAEHPELFPKPEPTPPKDPDKKKKKKNSAFKRKRPDSKPGSRKRLLRVPGMKPGDTCFICKAVDHIAKLCPQKAEWEKNKICLRCRRRGHRAKNCPAVQDAANDGKYCYNCGETGHSLSQCPHPLEQGGTKFAECFVCNQRGHLSKNCPQNTHGIYPKGGSCKICGGVTHLARDCPDKGKKGFVAANGPFDGSMRTEVRPCGQVTKFISGDDIEDDFMADDMHSADKKKSAKSTDGHVKPKKKGPKVVNFN 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02256 264 Pfam Zinc knuckle 93 109 IPR025836 -
Cca02g02256 264 Pfam Zinc knuckle 174 189 IPR025836 -
Cca02g02256 264 MobiDBLite consensus disorder prediction 1 62 - -
Cca02g02256 264 ProSiteProfiles Zinc finger CCHC-type profile. 148 163 IPR001878 GO:0003676|GO:0008270
Cca02g02256 264 Gene3D - 115 168 - -
Cca02g02256 264 PANTHER OS04G0555800 PROTEIN 1 264 - -
Cca02g02256 264 SUPERFAMILY Retrovirus zinc finger-like domains 63 110 IPR036875 GO:0003676|GO:0008270
Cca02g02256 264 MobiDBLite consensus disorder prediction 12 36 - -
Cca02g02256 264 MobiDBLite consensus disorder prediction 231 264 - -
Cca02g02256 264 ProSiteProfiles Zinc finger CCHC-type profile. 95 109 IPR001878 GO:0003676|GO:0008270
Cca02g02256 264 Pfam Zinc knuckle 120 136 IPR001878 GO:0003676|GO:0008270
Cca02g02256 264 Pfam Zinc knuckle 148 163 IPR001878 GO:0003676|GO:0008270
Cca02g02256 264 SUPERFAMILY Retrovirus zinc finger-like domains 116 165 IPR036875 GO:0003676|GO:0008270
Cca02g02256 264 MobiDBLite consensus disorder prediction 233 255 - -
Cca02g02256 264 MobiDBLite consensus disorder prediction 37 53 - -
Cca02g02256 264 ProSiteProfiles Zinc finger CCHC-type profile. 121 135 IPR001878 GO:0003676|GO:0008270
Cca02g02256 264 SMART c2hcfinal6 94 110 IPR001878 GO:0003676|GO:0008270
Cca02g02256 264 SMART c2hcfinal6 147 163 IPR001878 GO:0003676|GO:0008270
Cca02g02256 264 SMART c2hcfinal6 174 190 IPR001878 GO:0003676|GO:0008270
Cca02g02256 264 SMART c2hcfinal6 120 136 IPR001878 GO:0003676|GO:0008270
Cca02g02256 264 SMART c2hcfinal6 69 85 IPR001878 GO:0003676|GO:0008270
Cca02g02256 264 Gene3D - 61 114 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02256 95 191 C2H2 Transcription Factor Family AT5G20220 28.947 1.46e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02256 - - gmx:121174300 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02256 02 43120925 43124469 Cca02g02256 02 43120925 43124469 ECH