Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02253 ATGCCACCTCAAACCACACTCACCGGATTGCTCCACCACGTCGCCAGAATATTCCCCTCCCACCGTGCCCTCTCCGTCTCCGGTAAATTCGACCTCACCCACTCTCGCCTCCACCACCTCGTTGAAACCGCCGCCTCGCGCCTCCTCTCCGCCGGCATCAAACCCGGCGATGTCGTCGCCCTCACCTTCTCCAACACCGTCGAGTTTATAATAACGTTTTTGGCCGTTATTCGAGCGCGAGCGACGGCGGCGCCGTTGAACGCGGCTTACACAGCGGAAGAGTTCGAGTTTTATTTATCCGATTCTGAGTCGAAGCTGTTAGTAACCTCGAAAGAAGGGAACGAGCCGGCTCAAGCGGCGGCTTCCAAGCTCAACATTCCGCACGCAACGGCTTTTCTCGCTGAGGAGCTGACTCTTTCTCTGGATCACACCGAGTCAGCGCCCGACTCGCTCTCCGAACTCGCCAACGACCCGTCCGACGTGGCGCTCTTCCTCCACACTTCCGGCACCACCAGCCGCCCCAAGGGCGTGCCGTTGACGCAGCACAACTTAGCCTCTTCGGTCGAGAACATCAAAGCCGTCTACAAACTCACTGAGTCCGACTCGACGGTGATCGTTCTCCCGTTGTTCCACGTCCACGGCTTAATCGCGGCGTTGCTGAGTTCTCTCGCCGCCGGCTCCGCCGTGGCGCTTCCGGCGGCGGGGAGGTTCTCCGCCTCCACGTTTTGGAGTGACATGGTGAGGTACAAGGCCACGTGGTACACCGCGGTTCCTACGGTGCACCAGATCGTATTGGAGCGTCACTTGAAAAATCCGGAACCGGTTTACCCGAAGCTCCGGTTTATTCGGAGCTGCAGCGCGTCGCTTGCGCCGGCTATACTGGAGCGGTTGGAGGAGGCGTTCGGGGCCCCGGTTTTGGAGGCGTATGCGATGACGGAAGCGTCGCATTTGATGGCGTCGAACCCTTTGCCGGATGATGGGCCTCACCGGGCCGGGTCCGTTGGAAAGGCCGTGGGCCAGGAAATGGTGATATTGGATGAGAAGGGTGAGATTCAAAAGGGTGGGGTGACAGGCGAGGTTTGCATTAGGGGACCCAATGTAACGAATGGGTATAAGAATAACCCTCATGCGAATAGTGCTGCTTTTCAATTCGGGTGGTTCCACACGGGTGATCTCGGGTTTTTTGATTCCGATGGCTATTTGCACCTCGTTGGTCGTATCAAGGAGCTCATTAATCGCGGAGGGGAGAAAATATCACCAATAGAGGTGGATGCCGTCCTTCTGTCTCATCCAGACATTGCTCAGGCAGTTGCATTCGGAGTGCCGGATGACAAATATGGCGAAGAGATAAATTGTGCAATCATCCCAAAAGAAGGATCAAACATTGACGAGGCAGAGGTGCAGAGATTTAGCAAGAAGAACCTTGCAACCTTCAAAGTCCCTAAAAAGGTCTTCATCACTGATTCTTTGCCAAAGACCGCCACTGGCAAGATTCTAAGGCGTCTCGTAGCAGAACACTTCGTTTCTCAAACTTGA 1536 0.5573 MPPQTTLTGLLHHVARIFPSHRALSVSGKFDLTHSRLHHLVETAASRLLSAGIKPGDVVALTFSNTVEFIITFLAVIRARATAAPLNAAYTAEEFEFYLSDSESKLLVTSKEGNEPAQAAASKLNIPHATAFLAEELTLSLDHTESAPDSLSELANDPSDVALFLHTSGTTSRPKGVPLTQHNLASSVENIKAVYKLTESDSTVIVLPLFHVHGLIAALLSSLAAGSAVALPAAGRFSASTFWSDMVRYKATWYTAVPTVHQIVLERHLKNPEPVYPKLRFIRSCSASLAPAILERLEEAFGAPVLEAYAMTEASHLMASNPLPDDGPHRAGSVGKAVGQEMVILDEKGEIQKGGVTGEVCIRGPNVTNGYKNNPHANSAAFQFGWFHTGDLGFFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPKEGSNIDEAEVQRFSKKNLATFKVPKKVFITDSLPKTATGKILRRLVAEHFVSQT 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02253 511 CDD FACL_fum10p_like 19 505 IPR045310 GO:0016874
Cca02g02253 511 PANTHER OXALATE--COA LIGASE-LIKE 4 510 - -
Cca02g02253 511 Gene3D - 407 509 IPR045851 -
Cca02g02253 511 Gene3D - 1 406 IPR042099 -
Cca02g02253 511 Pfam AMP-binding enzyme 13 413 IPR000873 -
Cca02g02253 511 ProSitePatterns Putative AMP-binding domain signature. 164 175 IPR020845 -
Cca02g02253 511 Pfam AMP-binding enzyme C-terminal domain 422 497 IPR025110 -
Cca02g02253 511 PANTHER ACYL-COA SYNTHETASE 4 510 - -
Cca02g02253 511 SUPERFAMILY Acetyl-CoA synthetase-like 5 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02253 Cca-Chr2 43102715 43107479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02253 3 510 Monolignol Biosynthesis Gene Families AT4G05160 31.309 2.44e-62 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02253 K22133 - gmx:100783685 885.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02253 02 43102715 43107479 Cca08g00658 08 12049466 12053686 ECH
Cca02g02253 02 43102715 43107479 Cca02g02253 02 43102715 43107479 ECH