Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02243 ATGCTTTTAAACCAGATTTGTAATGAAGGTCGTCAGAATGCATTATCAGAGATCTTGGAGATATTGACAGTGGTATGTGAAACTCATAATTTACCTCTGGCTCAGACATGGATTCCTTGTAGGCATAGGAGTGTTTTGGCCCAAGGTGGTGGTCTAAAGAAAAGTTGTTCTAGTTTTGATGGTAGCTGCATGGGGAAAGTTTGCATGTCTACAACTGACATAGCATTCTATATTATAGATGCTCATTTATGGGGTTTTCGTGATGCCTGTGTTGAGCATCACTTGCAACAAGGTCAAGGGGTTGCTGGGAGGGCTTTTTTGTCCCACAACATGTGCTTCTGTTCAAACATTACTCAATTCTGCAAAACTGATTACCCCTTAGTTCATTATGCTCTCATGTTTGGGTTAACAAGCTGTTTTGCGATATGTTTACGGAGCTCTCATACAGGAAATGATGATTATGTATTAGAGTTTTTTCTGCCTCCTAGAGTCACAGACTTTCATGAACAAAAGACTTTGTTGGGATCCATATTGGCATCAGTGAAACAGCATTTCCAGAGTCTTAAGATTGCTTCTGGTGTTGAACTCGAGGATTGTTCAATTGAAATTGTTGAAGCAACAATTGAAAGAGTTCATACGAGGTTTGAATCTATTCCAATTGCCCCATCTATTAAATCACCAACTAGACATGATACCTCACCAAATATGGGTGAGGAAGTGCCACAGGATCCATCAGAACAACAAATGTTGATGTACTGTAATGACATCAATGATGGAGGGAGTCTTGGCGATAATGCAGGCAGAAACATTGAACATATACCCTCCTTAGAGGCTAAAAACATAAAGAAACCCTCAGAGAGGAAACGTGGAAAAACTGAGAAATCAATTAGTCTTGAAGTCTTGCAACGTTATTTTGCTGGGAGTCTAAAAGATGCTGCAAAGAGCCTCGGTGTTTGCCCTACCACAATGAAGCGCATCTGCAGGCAGCATGGGATATCACGTTGGCCATCTCGTAAGATCAACAAGGTTAACCGTTCTCTGTCCAAGCTCAAGCGTGTCATTGAATCTGTCCAAGGTGCTGAAGGAGCATTTGGTTTGAATTCTCTCAGCCCAAGTCCACTTCCCATTGCTGTTGGTTCCTTTCCCGAGCCTTGTACTCCAAACAAGTTCAGCCAGCCAGCCTCATTAACCATGAGGCCATCAGAGCCTCAGATGAAAGAGAATGAATTGAATGCCTCCAAAGCAGTAGAAACAACTGGAATGGAAGATCAATTTCTAGGAGGAAGGACACAGAATCTTGCGAAAGTAATTAATGACAAAGGTGTGACTACTTGGGAGGTTGCGAAAGAACCAAAAAGGACTAGAACTGGGAGTGGCTCAAGTGAGGATAGCACAAATCCTACTTCTCATGGTTCATGCCATGACAGTCCCCCGAATGAAAGCTCACCTGTAAAGGATATATTCATTACTTCCAACAACGATCAATGTGCTGTGCTAAGGGGATCACCAGAGTCAATAATGCAGCCAACTAATAATACACCGAACCAGCCAGTTCCTTACCCTATGCCAGACTTTGCATCCACAGAACTTCAAGAGCCATTTGGAGGGATGCTAATAGAGGATGCTGGTAGTTCTAAAGACTTAAGAAATTTGTGTCCTTTAGTAGCTGAGGCCATTTTGGAGGATCTGGTTCCAGAAGCTTGTGGGACTATTAATCCTCCAGGTTTAGATTTGTCTCCCAAGCAAAGCATGGATACTCCTAATAAAGCAGTGACACCTTTTGCAGCTAGGAAAGAAATGAAGACTGTGACTATCAAGGCAACATACAGAGAAGATATCATAAGATTTCGGGTCCCTTTGACATGTGGCATTGTGGAACTGAAAGAAGAAGTTGCCAAAAGATTGAAACTAGAGGTGGGTACATTTGATATTAAGTACCTGGATGATGATCACGAATGGGTTTTGATAGCCTGTGATGCAGACCTGCAGGAGTGCATGGATGTTTCAAGATCATCAGGGAGCAACATAATCAGGGTTTTGGTGCATGACATAACGTCCAATCTTGGAAGCTCTTGTGAGAGCTCAGGGGAGTAA 2094 0.4241 MLLNQICNEGRQNALSEILEILTVVCETHNLPLAQTWIPCRHRSVLAQGGGLKKSCSSFDGSCMGKVCMSTTDIAFYIIDAHLWGFRDACVEHHLQQGQGVAGRAFLSHNMCFCSNITQFCKTDYPLVHYALMFGLTSCFAICLRSSHTGNDDYVLEFFLPPRVTDFHEQKTLLGSILASVKQHFQSLKIASGVELEDCSIEIVEATIERVHTRFESIPIAPSIKSPTRHDTSPNMGEEVPQDPSEQQMLMYCNDINDGGSLGDNAGRNIEHIPSLEAKNIKKPSERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGLNSLSPSPLPIAVGSFPEPCTPNKFSQPASLTMRPSEPQMKENELNASKAVETTGMEDQFLGGRTQNLAKVINDKGVTTWEVAKEPKRTRTGSGSSEDSTNPTSHGSCHDSPPNESSPVKDIFITSNNDQCAVLRGSPESIMQPTNNTPNQPVPYPMPDFASTELQEPFGGMLIEDAGSSKDLRNLCPLVAEAILEDLVPEACGTINPPGLDLSPKQSMDTPNKAVTPFAARKEMKTVTIKATYREDIIRFRVPLTCGIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECMDVSRSSGSNIIRVLVHDITSNLGSSCESSGE 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02243 697 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 5 696 - -
Cca02g02243 697 MobiDBLite consensus disorder prediction 458 486 - -
Cca02g02243 697 MobiDBLite consensus disorder prediction 226 242 - -
Cca02g02243 697 ProSiteProfiles PB1 domain profile. 602 684 IPR000270 GO:0005515
Cca02g02243 697 Pfam PB1 domain 602 683 IPR000270 GO:0005515
Cca02g02243 697 CDD PB1_NLP 603 683 IPR034891 -
Cca02g02243 697 Pfam RWP-RK domain 295 343 IPR003035 -
Cca02g02243 697 SMART PB1_new 602 684 IPR000270 GO:0005515
Cca02g02243 697 MobiDBLite consensus disorder prediction 445 486 - -
Cca02g02243 697 ProSiteProfiles RWP-RK domain profile. 282 363 IPR003035 -
Cca02g02243 697 MobiDBLite consensus disorder prediction 222 242 - -
Cca02g02243 697 Gene3D - 599 683 - -
Cca02g02243 697 PANTHER PROTEIN NLP8 5 696 IPR045012 GO:0003700
Cca02g02243 697 SUPERFAMILY CAD & PB1 domains 600 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02243 Cca-Chr2 42937567 42942491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02243 5 697 NLP Transcription Factor Family AT4G24020 51.133 0.0 631
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Cca02g02243 PB1 2e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02243 - - gmx:100786118 1241.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00671 08 12491215 12495595 Cca02g02243 02 42937567 42942491 PCT