Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02238 ATGGGAAGCATCGTGGAAGGAGTTGAAGTTTGGGGAGAGGGGGTGGAAGACACAGTGTACGTGGCGGTCGGAAAGAACACCGAGAAGACTCAACAACTGTTGCATTGGGCGCTTCACAATTTCTCTGGCAAACAAATTTGCCTTCTTCACATTCATCAACCTCACTCTCTCAGTTCCTTTTTGGGCAGAAATCTCTCTGGGGTTGTACCAAaagagcatggaaatcaatcagtgcacaaacttctagaccaatacattctcactctggtcccagcagggGTACGGGTTCATAAATTGTTGATTGAGATGGATGATATTGAAAAAGGGATCGCAAAAGCTATTGCTCAACACAATATTAGATGGCTTGTAATGGGAGCAGCAGGAGATGGATATAACTTGGGCAAACTAGCTAAGCAAGAGTCAGAGAAAGCTATTTTTGTACGTGAACAAGCATTGCTATCCTGTAATATTTGGTTCATTTGCAAGGGAAGCCTTATATGTACTAGGGTATATAGTAAGCATACTTCTGATATAGAGACTGGCCCTGCTTTGTTGGCGCTCGATTCAAATACAGAAGCCAAACATTCAGAAAATATGAAATCAGAATCAACTCCTGATGCATTGAAATATTTAGATTCTGATGATATGAAAGAGATCAAAAGTGTCTATTCCAACCATTCCATAAATTCAAAATGGTCCTTTAATAATGTTACTGACAGGTCAAAGTTGGCAAATTTGATGTTTCATGAGGATGAAGCATTGGAAAGCTGGCATGCTAAGGAGATAAGAAGAACAAAAGAAGTTGAAGAACAATTGGCAAAGGCAAAGCAAGAGGTTCAGAAAATGAAGAATCAGCGGGATGAAATACTTGATGAATTACAAATGGTCCAAGATGAAAATTCAGCCCTTATGAACCAAATTTCAGAGTCCCAGTGTATGGAAACAGAGTTGGAGGAGAAGATCATATCAGCTGTGGACCTCTTGATAAGTTTCAGGGAAAAGAGAGATAGGCTCAGGATAGAGCATGCACATGCAGTTAGGGAAGTCAAAATGGTGAGAAAATTTGGGAAAGCAGATACCTCCTCTTATAGGGTAGAATTCCCTGCATTTTCTTTCATGGAGATCAATGAGGCAACTCATGATTTCGATCCATCTTGGAAGATTGGAGAGGGAAGGTATGGAAGTGTTTACAAGGGACTGCTCCGCAACATGCATGTTGCCATAAAAATGTTACCCTCTTATGGTCGTCAGAGCCTATCAGAATTCCAACATCAGGTAGAGGTCTTGTATAGGGTAAGACATCCAAACCTGTTAACACTAATTGGAAGCTGTGCAGAGTCTAGGTCACTTGTGTATGAGTACCTAAACAATGGCAGCCTTGAAAGCCATCTTTCCCGCAAGGATAAGAATCCACTTCCTTGGCAAATTCGAATATCCATTGCTATTTACATATGCTCTGCTTTAATCTTCCTTCACTCCAGCGAGCCTTGTATTATCCATGGGAATTTGAAACCTAGTAAGGTTCTCCTTGATGCGAACTTTGTTGCCAAGATCAGTGACTTGGGCATTCCTAGTTTAGTCCAGCAAAGTTTGGATTCAGCTGACACAAGCACAATATGTAACAACCCAAATGAATGTTTGGCATATGTGGATCCAGAGTGTTTTGTCACTGGCAAGTTTACACCAGAATCAGATGTATATTCATTCGGAGTCATATTGTTGCAACTTCTAACTGGAAGACCACTTTCGGGCCTAGTTAGAGATATGAAATGTGCATTGGAAAAGGAAAACCTTAAAGCAGTCTTGGACATTTCAGCTGGTGAATGGCCACTTTACCAAACCGAACAGCTGGCATATTTAGCATTGAGGTGTTGTGAAAAGACATGGTTGAACCGACCAGACCTTGTGTCAGAAATCTGGAGTGTTCTTGAACCATTCAAAGCTACTTGCATTGGCACGCCACCATATTTGACTTCTAAGAAGCTTCGTCGTGTTCCTTCCCATTTTGTCTGCCCCATTGTCCAGGAAGTAATGGAAGATCCATACATAGCTGCAGATGGCTTTACGTATGAAGAAGAGGCAATAAGAGGATGGTTGAATAGTGGCCACGACACGTCCCCCATGACAAACCTCAAGCTTGATCACACAGATTTGGTACCTAACTATGCTCTGCATAATGCAATTCTGGAGTGGCAGCAACAGTGA 2205 0.4036 MGSIVEGVEVWGEGVEDTVYVAVGKNTEKTQQLLHWALHNFSGKQICLLHIHQPHSLSSFLGRNLSGVVPKEHGNQSVHKLLDQYILTLVPAGVRVHKLLIEMDDIEKGIAKAIAQHNIRWLVMGAAGDGYNLGKLAKQESEKAIFVREQALLSCNIWFICKGSLICTRVYSKHTSDIETGPALLALDSNTEAKHSENMKSESTPDALKYLDSDDMKEIKSVYSNHSINSKWSFNNVTDRSKLANLMFHEDEALESWHAKEIRRTKEVEEQLAKAKQEVQKMKNQRDEILDELQMVQDENSALMNQISESQCMETELEEKIISAVDLLISFREKRDRLRIEHAHAVREVKMVRKFGKADTSSYRVEFPAFSFMEINEATHDFDPSWKIGEGRYGSVYKGLLRNMHVAIKMLPSYGRQSLSEFQHQVEVLYRVRHPNLLTLIGSCAESRSLVYEYLNNGSLESHLSRKDKNPLPWQIRISIAIYICSALIFLHSSEPCIIHGNLKPSKVLLDANFVAKISDLGIPSLVQQSLDSADTSTICNNPNECLAYVDPECFVTGKFTPESDVYSFGVILLQLLTGRPLSGLVRDMKCALEKENLKAVLDISAGEWPLYQTEQLAYLALRCCEKTWLNRPDLVSEIWSVLEPFKATCIGTPPYLTSKKLRRVPSHFVCPIVQEVMEDPYIAADGFTYEEEAIRGWLNSGHDTSPMTNLKLDHTDLVPNYALHNAILEWQQQ 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02238 734 Pfam Protein tyrosine and serine/threonine kinase 387 635 IPR001245 GO:0004672|GO:0006468
Cca02g02238 734 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 29 131 - -
Cca02g02238 734 PANTHER OS02G0152300 PROTEIN 13 733 - -
Cca02g02238 734 Pfam U-box domain 665 733 IPR003613 GO:0004842|GO:0016567
Cca02g02238 734 ProSiteProfiles Protein kinase domain profile. 382 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02238 734 ProSitePatterns Protein kinases ATP-binding region signature. 388 409 IPR017441 GO:0005524
Cca02g02238 734 Gene3D Transferase(Phosphotransferase) domain 1 455 650 - -
Cca02g02238 734 ProSiteProfiles U-box domain profile. 664 734 IPR003613 GO:0004842|GO:0016567
Cca02g02238 734 SUPERFAMILY RING/U-box 662 734 - -
Cca02g02238 734 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 13 733 - -
Cca02g02238 734 Coils Coil 258 306 - -
Cca02g02238 734 CDD STK_N 18 163 - -
Cca02g02238 734 Gene3D Phosphorylase Kinase; domain 1 354 454 - -
Cca02g02238 734 Gene3D HUPs 17 141 IPR014729 -
Cca02g02238 734 CDD RING-Ubox_WDSUB1_like 669 710 - -
Cca02g02238 734 SMART Ubox_2 668 731 IPR003613 GO:0004842|GO:0016567
Cca02g02238 734 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 664 734 IPR013083 -
Cca02g02238 734 SUPERFAMILY Protein kinase-like (PK-like) 362 643 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02238 Cca-Chr2 42895618 42903692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02238 15 733 U-box Gene Family AT2G45910 40.578 0.0 562
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Cca02g02238 PK_Tyr_Ser-Thr 7.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02238 - - gmx:100787938 1261.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02238 02 42895618 42903692 Cca02g02238 02 42895618 42903692 ECH