Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02237 ATGGTGCCCAAATTGAAAGCGTTTTTGGGTGGACTACAACCCTTGTCTACGTTGTTGCCGTTTAATTCCATCCTGAAATGGACTGAAACGACGCTGACGTTTACCTGTAAACCACGTGCAGTTCCGCAAACAGGCACGTGCGGCTCACTCACTTCCTACCTCGGAATGAAGTGCTTGTGTTTAGTCATAAACGCTTTTCGCCCTACTACAACTGCAGCGTGCAGGAACGACAGAGAGTtctctctctctctctctctTAAACGCTATTTTCTCGCGTTTTCTCTGACGATTTTCTGTCCATCCAAACACTCTCAATCCCTTCGCAGCCGCTTGCGGTTCCTCTTCGGATCGTCACAAGAGAATCTCTTCGCCTTTCAACCGATCTCTTCATCGTCCTCTCTCTCTGTGGAATCTAGCAAAGTTTTGAATAGATGCCAGTTGCAAAACTCACGACCTCTGGCACTTCCGATTTCACGAAAACAGTGGATTCAATTACTTCATGCATTAGATCAGCAAGAACTTCCAGGGTGGCCTTTGCTCTCTCCTGTGAAGGTTCAGTTGCAAAAGTGCAACAAGTGTTCTCGAGAATTTTGCTCTACCATTAACTATAGAAGACATATACGTGTACAGCATCGGTTGAAAAAGCTTGATAAGGATTCTAAAAAAAATAGGGATCTTTTAGGAGCATATTGGGATAAGCTCTCTGTAGAAGAGGCAAAGGAAGTTGTGTCATTCAAGAATGTAATGCTGGAGGAAGTTCGAGGCTCTTCAATTTTAGAGGCTTTGATAACTCTTAGAAAACAAGGATTTTCTTCTCTTCCACAATATTATCTGAGGGCTGGTTCTGCCCTTTTGGATATTGTTCAATCCAGGCCGTCTAGTTTTCCCATATCTTCCCAAGAGTTGTTCAGTATCCTAGATGATTCTAGTGAAAAAACATTTTTGTGTGGATCAGCAGTGTCAATGCAAAGATATGTTTTCGATGGAGAGGCTGGAAAGATTGGTCTTGAACCCAAAAACCTCGTTGCTTGCACAAGTTTTTTGCTAGAGCAGAAATTGGTGAAAGCCTGGCTTGCTGACAAGGATGCTGAAGCATTGAGATGCCAGAAGCTGCTAGTGGAGGAGGAGGAAGCTGCTCAGAAAAGAAAAGCTGAGATTTTAGAGAAGAAACGCCTGAAAAAGCTTAGACAGAAAGAACACAAGGCAAGGGAACGACTTGAAGATGACTCAGAAATCAAAGGGAACATAAGCAGCACAGGGGAGGATGTATCGCCAACAAAAGCATCTCTGGGTACATTTGACTTTGATGCACGTAATCCAGATATATTTGCGGATCATTCTCCTCCACCACATGCAACTTCTGACTTCTTAGACACTAATGATGTTATAGAAGGGGATACACTGGCAGGGTATGATTGTGACACTGATCAGTATATAGAGCGACAGACATCAGGAGGATATAATCGCCGTTGCACAATAGCTGCCAGATGGCAAGGAATGCAAAAAGCACAGTGGGCTAGAGCCAATGGTCATGCAAGCCAGAATTCTCAAATGTGTAAGCTTGGAGTTGTTCAAAAACATGGAACCAACCGTGATCAAAGGGCAGCTTCTATAGCTAATGGGAGCAAGGTTTGGAGCCGGAAACCAAAACCAGAAACTAATGGGGTGGTTTTAAAAGCCAAACTGCAGACAGAACCAGACAAAGGCAAGAATCATGAAGTTTTGATAGGATCCGTATCTGTAAGTCTGGGTAATTGCAGCCATTCAGATGGTGATTTTGTGGCACCCCAGCGGGACTGCATGGTAGAGAATCTGGCCAAGCAGAATACTGCTCAGGAGAAGATAGTGAAACTCGATTCCTCTCAGGGAGGTAACAGTCGGTTAACAGTTAAGCTTTGGAGGCCGGTTAGCCAGCAAGGAACTAAAGATCCATTGCCACTTCAAAATGGTGGGACAGAAGCTGATGTAATTAATGGAAAATGTGATCAAAATTTGTCTGATCAAAGTAGTATAAGGTTGTGTAGTATAGATGGTAGTGATATTGGTTTTGGGAACTATTTTTCCCATACTGGGGCTAAAGTAAATTCGGAAAGCTTACGTCTATCCAGCCATGCTGCAAAAGCTTTTCTTGCACAAAGATGGAAAGAAGTTATCTCATCAAACCATGTGCAATTGGTTGTTACACCTGATTTTGAACCTCTCGGAGGCCAGCAGGTACTGAATCATGAACTACCAGCATCTCAATCTTCTAATGTGGACAGATGTAGCATTGTTGCAAATACAGAGAACCGGTTGCCTGCAACCTCTGGAGTGGCTAAATCCAAATCGAAAACGAAGCCTGAGAAGGGAATGAAGATAAAGTACATTCCCAAACAGAAAGCAGCAACGTAA 2391 0.4308 MVPKLKAFLGGLQPLSTLLPFNSILKWTETTLTFTCKPRAVPQTGTCGSLTSYLGMKCLCLVINAFRPTTTAACRNDREFSLSLSLKRYFLAFSLTIFCPSKHSQSLRSRLRFLFGSSQENLFAFQPISSSSSLSVESSKVLNRCQLQNSRPLALPISRKQWIQLLHALDQQELPGWPLLSPVKVQLQKCNKCSREFCSTINYRRHIRVQHRLKKLDKDSKKNRDLLGAYWDKLSVEEAKEVVSFKNVMLEEVRGSSILEALITLRKQGFSSLPQYYLRAGSALLDIVQSRPSSFPISSQELFSILDDSSEKTFLCGSAVSMQRYVFDGEAGKIGLEPKNLVACTSFLLEQKLVKAWLADKDAEALRCQKLLVEEEEAAQKRKAEILEKKRLKKLRQKEHKARERLEDDSEIKGNISSTGEDVSPTKASLGTFDFDARNPDIFADHSPPPHATSDFLDTNDVIEGDTLAGYDCDTDQYIERQTSGGYNRRCTIAARWQGMQKAQWARANGHASQNSQMCKLGVVQKHGTNRDQRAASIANGSKVWSRKPKPETNGVVLKAKLQTEPDKGKNHEVLIGSVSVSLGNCSHSDGDFVAPQRDCMVENLAKQNTAQEKIVKLDSSQGGNSRLTVKLWRPVSQQGTKDPLPLQNGGTEADVINGKCDQNLSDQSSIRLCSIDGSDIGFGNYFSHTGAKVNSESLRLSSHAAKAFLAQRWKEVISSNHVQLVVTPDFEPLGGQQVLNHELPASQSSNVDRCSIVANTENRLPATSGVAKSKSKTKPEKGMKIKYIPKQKAAT 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02237 796 MobiDBLite consensus disorder prediction 400 415 - -
Cca02g02237 796 ProSiteProfiles Zinc finger C2H2 type domain profile. 188 216 IPR013087 -
Cca02g02237 796 ProSitePatterns Zinc finger C2H2 type domain signature. 190 211 IPR013087 -
Cca02g02237 796 MobiDBLite consensus disorder prediction 530 550 - -
Cca02g02237 796 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 158 794 - -
Cca02g02237 796 Coils Coil 389 412 - -
Cca02g02237 796 MobiDBLite consensus disorder prediction 399 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02237 Cca-Chr2 42885574 42891846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02237 151 793 C2H2 Transcription Factor Family AT4G25610 42.049 3.81e-132 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca02g02237 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02237 - - gmx:100799153 1031.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02237 02 42885574 42891846 Cca02g02237 02 42885574 42891846 ECH
Cca08g00680 08 12631851 12643628 Cca02g02237 02 42885574 42891846 PCT