Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02232 ATGCATTCATGGTGGGAAAAATTGCTATCAaaagaaaccaagaagaaagcaagtaaagaaagTTTTTTTGACACACTGCACCGAAAATTTAGATTTCCATCTGAAGGTAAACTAAGCATTAGATCTGGAGGATCCCGTAGACATTGCAATGACACAATTTCAGAGAAGGGAGATCGTTCTCCATCAGAATCAAGGTCTCCTTCACCTTCCAAAGTGGCAAGATGTCAAAGTTTTGCTGAAAGGCCGCATGCTCATCCACTTCCACTTCCTGGTCTGCACCCTTCAAGTGTAGGCCGAGTAGATTCCGAAATTAGCATATCATCAAAGTCAAGATTGGAAAAAGTCTCCAAGTCATCATTGTTTCTTCCACTTCCAAAACCTGGATGCATACGTTGTAAACCAAACCCTGCAGATGTAGATGGAGATATGGTCACTGTTTCAGTCTTTAGTGATGGCTCTGGTGATAGTGATGAGCTGGCAGACTTGCACAATCGTAGTCCTTTAGCAACTGACACTGAGACTGGGACTAGAAATGCTGCTGGCAGTCCATCCAGcTCGATGCTCAAGGATCAACCACCTACTGCTTCCCAACTGAATTCAACAGGAGTTAAAAAACCAGGAAATATTCTTAGTAATCATGTGTCTTCTACTTCACCAAAACGGAGGCCTTTGCGCAACCATGTTCCAAATCTTCAGGTTCCTCCTCATGGTGCCTTCTATAGTGCTCCTGATAGTTCCTTGTCAAGTCCATCAAGAAGTCCATTGAGAGCATTTGGCACAGATCAGGTGTTGAATTCTGCTTTTTTGGCTGGAAAGCCATATTCAGAGGTCAATTTTGTTGGATCTGGGCATTGCTCTAGTCCAGGTTCTGGTCATAATTCTGGGCATAATTCAATGGGTGGGGACATGTCAGGACAGTTATTTTGGCAACCAAGCAGGGGTAGCCCTGAGTATTCTCCAGTACCTAGTCCCAGAATGACTAGCCCTGGTCCAAGCTCTAGAATTCAGAGCGGAGCAGTCACACCTATTCATCCCAAAGCTGGGGGAGCACCCACTGAGGCACAGAATGGATGGGTTGATGATGGAAAACAGCAGACTCATCGATTGCCTCTTCCTCCTTTGACAGTTACCAATTCCTCACCGTTCTCTCATTCTAATTCTGCATCAACATCTCCATCCGTGCCAAGAAGTCCAGCTAGAGCAGATAATCCAAGCTCTGGCTCACGTTGGAAAAAAGGGAAGCTGCTTGGCAGCGGCTCATTTGGACATGTCTATCTTGGTTTCAATAGTGAAAGTGGCGAAATGTGTGCAGTCAAGGAGGTTACCCTGTTTTCAGATGATCCTAAGTCTATGGAAAGTGCTAAGCAATTTATGCAGGAAATTCATTTATTAAGCCGTTTACAGCATCCAAATATTGTGCAGTATTATGGTTCTGAAACGGTTGATGACAAGCTTTACATATACCTTGAGTATGTATCTGGAGGCTCTATACATAAACTTCTTCGAGAATATGGGCAGTTTGGTGAACTAGTTATTCGTAGTTATACTCAACAAATTTTATCAGGGCTTGCTTATTTACACGCTAAAAATACTCTGCATAGGGACATCAAAGGAGCAAATATACTGGTAGATCCAAATGGCCGGGTCAAGTTGGCAGACTTTGGCATGGCAAAACATATAAAAGGGCAGTCGTGTCCATTGTCATTCAAGGGAACCCCTTACTGGATGGCTCCTGAGGTTATAAAGAACTCTAATGGATGCAACCTTGCAGTGGATATATGGAGTCTTGGATGCACAGTTTTGGAAATGGCTACGACCAAACCTCCTTGGTTTCAGTATGAAGGGGTTGCTGCCATGTTCAAAATTGGTAATAGCAAGGAGCTCCCAACAATCCCAGATCATCTCTCAAATGAAGGAAAAGATTTTGTTAGGAAATGTCTTCAGCGTAATCCGCATGATCGTCCTTCTGCCAGTGAATTATTGGACCACCCTTTTGTAAAACATGCTGCACCTGTGGAAAGACCTATTCTGGCTCCTGAATCGCTGGACCCTTTTTCTGGGATTACACAGGGAGCAAAAGCTCTGGGCATTGTACAAGGAAAGAATCTTTCTAGCTTGGATTCAGATAGACTTTCTGTTCATTCTTCTAGATTTTTGAGAACTAATCCTCATGAAAGTGAAATCCATATTCCGAGGAATATATCTTGCCCTGTCTCTCCCATTGGTAGCCCACTTTTGAGGTCAAGATCACCACAGCACAGGAATGGAATAATGTCTCCTTCTCCTATATCTAGCCCTCGGACTGCTTCTGGGGCATCCACGCCTCTCGCTGGTGGCAGTGGTGCCATTCCATTTGGTAATCACTCTAAACAGTCAATTTACTTCCAAGAAGGTTTTGGAAGCATGCCAAAGTCCTCAAACGGTGTCTACATTAATGGCCCTGGTCATCATGACTTAAGTGTTGACATTTTTCGAGGAATACAAATAGGGTCTCACATTCCATCAGAACTGGTTTCCAGTGAAAATGATGTTCTGGTTAAGCAGTTTGCAAGGCCTCCTCATCCAGAAACATATGATTTTCAGTCAGTCTTGGCTGATCGTGTTGGCCGGCAGCTGCTAGGGGAGCATGTTAAGATTAACCCATCGCTTGATCTCAGTCCCAACTCATCTTTGTTTAGCCGGCCAAATGGTTTATGA 2697 0.4342 MHSWWEKLLSKETKKKASKESFFDTLHRKFRFPSEGKLSIRSGGSRRHCNDTISEKGDRSPSESRSPSPSKVARCQSFAERPHAHPLPLPGLHPSSVGRVDSEISISSKSRLEKVSKSSLFLPLPKPGCIRCKPNPADVDGDMVTVSVFSDGSGDSDELADLHNRSPLATDTETGTRNAAGSPSSSMLKDQPPTASQLNSTGVKKPGNILSNHVSSTSPKRRPLRNHVPNLQVPPHGAFYSAPDSSLSSPSRSPLRAFGTDQVLNSAFLAGKPYSEVNFVGSGHCSSPGSGHNSGHNSMGGDMSGQLFWQPSRGSPEYSPVPSPRMTSPGPSSRIQSGAVTPIHPKAGGAPTEAQNGWVDDGKQQTHRLPLPPLTVTNSSPFSHSNSASTSPSVPRSPARADNPSSGSRWKKGKLLGSGSFGHVYLGFNSESGEMCAVKEVTLFSDDPKSMESAKQFMQEIHLLSRLQHPNIVQYYGSETVDDKLYIYLEYVSGGSIHKLLREYGQFGELVIRSYTQQILSGLAYLHAKNTLHRDIKGANILVDPNGRVKLADFGMAKHIKGQSCPLSFKGTPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWFQYEGVAAMFKIGNSKELPTIPDHLSNEGKDFVRKCLQRNPHDRPSASELLDHPFVKHAAPVERPILAPESLDPFSGITQGAKALGIVQGKNLSSLDSDRLSVHSSRFLRTNPHESEIHIPRNISCPVSPIGSPLLRSRSPQHRNGIMSPSPISSPRTASGASTPLAGGSGAIPFGNHSKQSIYFQEGFGSMPKSSNGVYINGPGHHDLSVDIFRGIQIGSHIPSELVSSENDVLVKQFARPPHPETYDFQSVLADRVGRQLLGEHVKINPSLDLSPNSSLFSRPNGL 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02232 898 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 811 - -
Cca02g02232 898 ProSitePatterns Protein kinases ATP-binding region signature. 416 439 IPR017441 GO:0005524
Cca02g02232 898 MobiDBLite consensus disorder prediction 35 97 - -
Cca02g02232 898 MobiDBLite consensus disorder prediction 741 782 - -
Cca02g02232 898 MobiDBLite consensus disorder prediction 286 412 - -
Cca02g02232 898 CDD STKc_MEKK1_plant 409 666 - -
Cca02g02232 898 MobiDBLite consensus disorder prediction 35 62 - -
Cca02g02232 898 ProSiteProfiles Protein kinase domain profile. 410 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02232 898 SMART serkin_6 410 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02232 898 MobiDBLite consensus disorder prediction 745 775 - -
Cca02g02232 898 Pfam Protein kinase domain 411 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02232 898 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 811 - -
Cca02g02232 898 MobiDBLite consensus disorder prediction 370 404 - -
Cca02g02232 898 MobiDBLite consensus disorder prediction 286 313 - -
Cca02g02232 898 SUPERFAMILY Protein kinase-like (PK-like) 392 684 IPR011009 -
Cca02g02232 898 MobiDBLite consensus disorder prediction 167 223 - -
Cca02g02232 898 Gene3D Transferase(Phosphotransferase) domain 1 407 681 - -
Cca02g02232 898 MobiDBLite consensus disorder prediction 149 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02232 Cca-Chr2 42850153 42861159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02232 4 895 MAP Kinase Kinase Kinase AT1G63700 57.395 0.0 863
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Cca02g02232 Pkinase 1.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02232 K20717 - gmx:100797994 1524.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02232 02 42850153 42861159 Cca06g01802 06 33402068 33410101 ECH
Cca02g02232 02 42850153 42861159 Cca02g02232 02 42850153 42861159 ECH
Cca08g00694 08 12915640 12923706 Cca02g02232 02 42850153 42861159 PCT