Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02231 ATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAGGTAAATTTTTTGGAATGGAAGAGGGAAGGGGGTCATAGAGAGAACCTGGTTATGCAACGCTACCATATTACTGGACGTGACGATTACAAAAAATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACAGATGGATCCAAAGGATCCTTTTCGGATTGATATGACTGATAAGCTTTTGGAAAAACTCTATAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTATGCGAACGCTTGACTGTGTCATCCTTTTGTAGGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAAAGAAGCTGTCACATACATTGAGCAAGGGCATATACGAGTTGGTCCAGAGACTGTTACAGACCCAGCTTATCTAGTAACCAGAAACATGGAAGACTTCGTTACATGGGTGGATACATCAAAAATAAAGAGAAAGGTGCTTCAGTACAATGACAAATTGGATGACTATGATTTAATGAATTAA 549 0.3898 MRKLKFHEKKLLKKVNFLEWKREGGHRENLVMQRYHITGRDDYKKYSGLCHMVQKLVNILKQMDPKDPFRIDMTDKLLEKLYNMGVIPTRQSITLCERLTVSSFCRRRLSTVLVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAYLVTRNMEDFVTWVDTSKIKRKVLQYNDKLDDYDLMN 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02231 182 PANTHER 30S 40S RIBOSOMAL PROTEIN 1 181 IPR022801 -
Cca02g02231 182 SUPERFAMILY Alpha-L RNA-binding motif 26 175 - -
Cca02g02231 182 Pfam S4 domain 107 153 IPR002942 GO:0003723
Cca02g02231 182 Gene3D - 107 182 IPR036986 GO:0003723
Cca02g02231 182 SMART s4_6 107 170 IPR002942 GO:0003723
Cca02g02231 182 PANTHER U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3 1 181 - -
Cca02g02231 182 CDD S4 107 168 - -
Cca02g02231 182 ProSiteProfiles S4 RNA-binding domain profile. 107 173 - -
Cca02g02231 182 SMART Ribosomal_S4_2 3 106 IPR001912 GO:0019843
Cca02g02231 182 Pfam Ribosomal protein S4/S9 N-terminal domain 3 105 IPR001912 GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02231 Cca-Chr2 42841174 42845022 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02231 63 162 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 31.683 4.83e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02231 K14560 - gmx:100798516 362.844