Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02230 ATGGCACTAGCTTTTCCGAAAGTGGTGTATGGTTTAATTGCATTTGCAATCTTCTGGGTATTAGCAGTTTTCCCAGCTGTGCCTTTTCTACCAGTTGGAAGAACTGCAGGGTCCCTACTTGGTGCCATGCTCATGGTCCTATTCCAAGTTATCACTCCAGATGAAGCTTATGCCACAATTGATCTCCCAATTCTTGGTCTTCTTTTTGGGACAATGATTGTGAGTGTTTATCTTGAAAGAGCAGACATGTTTAAATACATAGGCAAGTTGCTGGCTTGGAAAAGTAGAGGTGCAAAGGACTTGCTTTGTAGGATCTGTATTATTTCTGCTGTCTCAAGTGCTCTTTTCACAAATGACACTTCTTGTGTTGTTTTAACTGAATTCATACTAAAAATTGCAAGGCAGCATAACCTTCCTCCGACACCCTTCCTACTTGCCCTTGCTTCAAGTGCTAATATTGGATCCTCAGCAACACCAATTGGCAACCCCCAAAACCTTGTTATAGCTGTTCAGAGTAAAATATCATTTGGGAATTTTCTGATTGGTATTCTTCCAGCTATGGTGGCAGGAGTTGTAGCAAATGCTACAATTCTTCTAATCATGTATTGGAAGTTATTGTCTGTTCATAAGGATGAAGAAGATGCAGGTGCTGAAGATGTGGTAGAGGAGGAGTATGATTCCCATAGGTTTTCTCCAGCCACGATGTCTCATTTTTCATCCTTGAGTTCTCAAGAATGGCATTCTCATCTTGAATCTATTAGTATTCAGAACTCTCCTCAACTTCAGATTCTAAGAAACCGATCGGTTTCAAATGCAAGTGAAAGTAATATAACAAGTAATGGAATTGCTAGCAGCACTTTTGATTCTGCAAAAATGTCAAACATATCAAGGGATGGAATAAATGGTGTGGCATCTCTGACAAAGGAGGAAACTAGCCCTTCAAATTCTTCATCAGCAGTAGATACACCTATTCACCCTTCAGAAAGAAAAAGCGATTTTATCATAAGATGGAAAAGGGTACTGTGGAAATCTTGCGTTTACATCATCACACTAGGAATGCTGGTTGCTTTACTTCTAGGTTTAAACATGTCATGGACTGCAATTACTGCTGCACTTGCTCTCATAGTTCTTGATTTCAAGGATGCTAGACCATGTTTGGAGAAGGTTTCATATTCACTTTTGATATTCTTTTGTGGAATGTTTATCACAGTAGATGGCCTGAATAAGACTGGAATTCCAAGTTCTCTGTGGGATTTGATGGAGCCCTATTCTCATGTTGATCGTGCTAGTGGGGTTGCAGTACTTGCAATTGTCATACTTGTCCTATCAAATTTGGCTTCAAATGTACCAACAGTTCTGTTGCTTGGAGGAAGGGTAGCAGTCTCAGCTGCTGCAATTTCGAAAGCAGATGAGAAGAAGGCATGGCTGATCTTGGCTTGGGCCAGCACCATATCAGGGAATCTCTCACTGTTGGGATCAGCTGCTAACTTGATAGTGTGTGAACAGGCTCGCCGTGCTCCAAACCTACCATACACATTAACCTTCTGGAGTCACCTCAAATTTGGCCTTCCTTCCACAATCATAGTCACTGCTATTGGTTTGACATTCATAAGATGA 1617 0.4094 MALAFPKVVYGLIAFAIFWVLAVFPAVPFLPVGRTAGSLLGAMLMVLFQVITPDEAYATIDLPILGLLFGTMIVSVYLERADMFKYIGKLLAWKSRGAKDLLCRICIISAVSSALFTNDTSCVVLTEFILKIARQHNLPPTPFLLALASSANIGSSATPIGNPQNLVIAVQSKISFGNFLIGILPAMVAGVVANATILLIMYWKLLSVHKDEEDAGAEDVVEEEYDSHRFSPATMSHFSSLSSQEWHSHLESISIQNSPQLQILRNRSVSNASESNITSNGIASSTFDSAKMSNISRDGINGVASLTKEETSPSNSSSAVDTPIHPSERKSDFIIRWKRVLWKSCVYIITLGMLVALLLGLNMSWTAITAALALIVLDFKDARPCLEKVSYSLLIFFCGMFITVDGLNKTGIPSSLWDLMEPYSHVDRASGVAVLAIVILVLSNLASNVPTVLLLGGRVAVSAAAISKADEKKAWLILAWASTISGNLSLLGSAANLIVCEQARRAPNLPYTLTFWSHLKFGLPSTIIVTAIGLTFIR 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02230 538 PANTHER TRANSPORTER ARSB-RELATED 6 538 - -
Cca02g02230 538 PANTHER TRANSPORTER ARSB-RELATED 6 538 - -
Cca02g02230 538 CDD YbiR_permease 27 537 - -
Cca02g02230 538 Pfam Citrate transporter 26 484 IPR004680 GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02230 Cca-Chr2 42832786 42839258 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02230 - - gmx:100781849 912.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02230 02 42832786 42839258 Cca08g00696 08 13045976 13048010 ECH
Cca02g02230 02 42832786 42839258 Cca02g02230 02 42832786 42839258 ECH
Cca08g00695 08 12972915 12978895 Cca02g02230 02 42832786 42839258 PCT
Cca02g02230 02 42832786 42839258 Cca08g00697 08 13056864 13061776 PCT