Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02225 ATGTCGTCGCCGGGCTTCCCCAACGGCGGACCCTCCGATTTCTACGGCGGACCAGCGGGATTCCCCAGGCGATCCATGGCGCTTCAacccaccaacaccacccaccaccctctctaccgaacccaaccTTCACAGATTTTGCTAGACCCTTCGTCCCACATCGCCCAAACCCAAACACCCAACTTCATCAGGAAACGCACCCTCGCAGAAATCCAAACCCTTATCACcaacaccaacaacaacaacaacaacaacagcagcaacaacCTTAACCCACTCCTATCAAACTATCTACTTCGCTCTGTCAAGCCCAGAACTTTCCAACACGTGGATTTCTCCTCACGCGCGCAATTTCACCACCTTCCCCCTAACGCCGTCAATTCACAGACCCAATATTCCATCCTCCCCAACCCTAACGCAAATTTCCCTCCGGTTCACACCAGACTCACCGCACCCCAGGAACCGGACAAGAACTCGATAGACCACCGCTTACAACTACAAGAGTTGGAAAAGCAGCTTCTAGAAGACAACGACGACGAAAACGGCGACGCCGTTTCGGTCATTACCAACTCTGAATGGTCCGACACAATACAGAACCTAATCACACCGCACAAGCCCGCGTCTCCCTCGTCCACTTCCTCTACGACGTCGTCCAACTCCTCAACGACGTCGTCCAACACCTCTTCGATCTGCTTCAAGCAATCCCTAACGGAGGCCGCATCCGCGATCTCGGAAGCCAAATTCGATGCCGCCACGGAGATCCTAAACCGTTTATCTCAGGGTTCCAACCTCAACAAGAATTCGGATCAACGCTTCGTCAATTGCATGGTTTCCGCTCTGAAATCCAGGATGAACCACGTCGAGTATCCACCGCCGGTCGCTCTCATGGTCGCCAACATCGCGATTCTCGAATCCGCATTCGACGACAAAGCAGAGAACGCGAGGCTATGCGTGGTGGATTTCGACATCGGGAACGGGAACCAATACGCGAGCCTCCTCCACGAGCTTTCGGCGCGGCGGAAGGGCGCGCCGGCCACCGTCAGGATCACCGCCCTGGGGGACAGCGACGCCGACGAGAGGCTGAAGGCGGTGGGAGAAGTCCTGGGGAGACACGCGGAGCGACTCGGTGTTGGTTTTGAATTCAAAGTGGTGGTGAGTCCGAAACTGGACGAGTTGACTCGCGAGTCGCTGGGTTGCGACCCGGACGAGCCGCTGGCTGTGAATTTCGCGTTCAAGCTATTCAAAATGGCCGACGAGAGCGTCTCCCCGGAGAATCCGCGCGACGCGCTTCTGCGGCGCGTGAAGGCACTCGCGCCGCGCGTGGTGACGCTGGTGGAGCAGGAGGCGAACGCGAACACGGCGGCATTCGTGGCGCGCGTGGCGGAGTCGTGCGCGTATTACGGCGCGCTGTTCGAGTCGCTAGAGTCGACGATGGAGTCGGAGCGAGTGAGGATCGAGGAGGGGCTGAGTCGGAAGGTGGCGAACTCGGTGGCGTGCGAGGGAAGGGAGCGCGTGGAGCGGTGCGAGGTGTTCGGGAAGTGGCGCGCGCGCATGAGCATGGCTGGGTTCAGGTTGAAGCCGCTGAGTCAAAGGGTGGCTGAGTCTATCAAAGCGCGACTCTTGGCTGCTGGGAACCGTGTCTCCGTTAAAGTCGAGAACGGTGGGATTTCCTTCGGATGGATGGGAAGAACCCTCACCGTCGCTTCTGCTTGGTGTTGA 1719 0.5556 MSSPGFPNGGPSDFYGGPAGFPRRSMALQPTNTTHHPLYRTQPSQILLDPSSHIAQTQTPNFIRKRTLAEIQTLITNTNNNNNNNSSNNLNPLLSNYLLRSVKPRTFQHVDFSSRAQFHHLPPNAVNSQTQYSILPNPNANFPPVHTRLTAPQEPDKNSIDHRLQLQELEKQLLEDNDDENGDAVSVITNSEWSDTIQNLITPHKPASPSSTSSTTSSNSSTTSSNTSSICFKQSLTEAASAISEAKFDAATEILNRLSQGSNLNKNSDQRFVNCMVSALKSRMNHVEYPPPVALMVANIAILESAFDDKAENARLCVVDFDIGNGNQYASLLHELSARRKGAPATVRITALGDSDADERLKAVGEVLGRHAERLGVGFEFKVVVSPKLDELTRESLGCDPDEPLAVNFAFKLFKMADESVSPENPRDALLRRVKALAPRVVTLVEQEANANTAAFVARVAESCAYYGALFESLESTMESERVRIEEGLSRKVANSVACEGRERVERCEVFGKWRARMSMAGFRLKPLSQRVAESIKARLLAAGNRVSVKVENGGISFGWMGRTLTVASAWC 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02225 572 MobiDBLite consensus disorder prediction 201 227 - -
Cca02g02225 572 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 57 572 IPR005202 -
Cca02g02225 572 Pfam GRAS domain family 294 571 IPR005202 -
Cca02g02225 572 PANTHER SCARECROW-LIKE PROTEIN 8 57 572 IPR030013 -
Cca02g02225 572 MobiDBLite consensus disorder prediction 1 36 - -
Cca02g02225 572 ProSiteProfiles GRAS family profile. 223 572 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02225 Cca-Chr2 42759196 42760979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02225 94 571 GRAS Transcription Factor Family AT5G52510 47.834 5.42e-133 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca02g02225 GRAS 1.2e-80 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02225 - - gmx:100800097 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02225 02 42759196 42760979 Cca02g02225 02 42759196 42760979 ECH
Cca08g00708 08 13375925 13377826 Cca02g02225 02 42759196 42760979 PCT