Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02214 ATGATGGTGTCCAAAAACCCCAACCCCTCTGAGGCTTTCTATTTGGACCCTTCCGCCATGTCGCTCCCCGGAATCCTCCCCTTCGCCGGAGATTCGCTGGAGGACCCTGCTAAGAAGACTCGCAAGCCTTACACTATCACCAAGTCTAGGGAGAGTTGGACTGAACCCGAACACGACAAATTTCTCGAAGCTCTTCAATTGTTTGACCGTGACTGGAAAAAGATTGAAGCATTTGTTGGATCCAAGACAGTTATCCAGATACGTAGCCATGCTCAGAAATACTTTCTAAAAGTTCAAAAGAGTGGGACAAGTGAACATCTTCCTCCACCCAGACCAAAAAGAAAAGCTGCCCATCCATATCCTCAGAAAGCTTCAAAAAATGCCCCAGTACTCTCACAAGTATCAGGATCCTTTCAATCTTCATCGGCTTTGCTTGAACCTGGATACATAATAAAGCCTGATTCTTCAGCAATGCTTAGAACTCCTATTATTAACACTGCAGTGTCTTCCTGGTCAAACAACTCTCTGCAGGAAACCACCAATGTATTGCATGGGAAAAAGGTAAATAATTGTTGCAGTAGCAGTGAAAGTCCTAGAGCACAGTTGGTTGGTGAATCTAATTGTCGAGGGAATATTAATAGCCATCCATTGAGAGGCAAGGGTTTAATGGTTTTCTTTCTAATTTCTATGTTGTCGTCTTCCATTATTACATCACATTTAATGTGTGCATCGCAAAGTTGA 741 0.4318 MMVSKNPNPSEAFYLDPSAMSLPGILPFAGDSLEDPAKKTRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGTSEHLPPPRPKRKAAHPYPQKASKNAPVLSQVSGSFQSSSALLEPGYIIKPDSSAMLRTPIINTAVSSWSNNSLQETTNVLHGKKVNNCCSSSESPRAQLVGESNCRGNINSHPLRGKGLMVFFLISMLSSSIITSHLMCASQS 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02214 246 Pfam Myb-like DNA-binding domain 50 95 IPR001005 -
Cca02g02214 246 SMART sant 49 97 IPR001005 -
Cca02g02214 246 PANTHER SWI/SNF COMPLEX-RELATED 28 218 - -
Cca02g02214 246 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 48 97 IPR006447 GO:0003677
Cca02g02214 246 ProSiteProfiles SANT domain profile. 48 99 IPR017884 -
Cca02g02214 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 99 IPR017930 -
Cca02g02214 246 Gene3D - 53 100 - -
Cca02g02214 246 PANTHER PROTEIN REVEILLE 6 28 218 - -
Cca02g02214 246 SUPERFAMILY Homeodomain-like 44 100 IPR009057 -
Cca02g02214 246 CDD SANT 52 95 IPR001005 -
Cca02g02214 246 MobiDBLite consensus disorder prediction 100 129 - -
Cca02g02214 246 ProSiteProfiles Myb-like domain profile. 45 95 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02214 Cca-Chr2 42655799 42664591 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca02g02214 Myb_DNA-binding 2.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02214 - - gmx:778166 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02214 02 42655799 42664591 Cca08g00722 08 13616599 13623513 ECH
Cca02g02214 02 42655799 42664591 Cca02g02214 02 42655799 42664591 ECH