Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02209 ATGGCTGAGGACTGGGATCTCTTTGCCATCGTTCGAAGCTGCCAATCACCCACCACACCAATTCCACAAACCACCACCGATACTTCCTCTTCCACTCTCAACCAACAACAACAATATGATGCATTTTCTTTTCCCAACATACTGCAACAACCTACAACAAATGAGCTACACCAATTGTTCACACCCTTTAACCCCACCACCACCACTTCCACTACTGCTCTTACCATCAATCCCAATTATTTTCCCCAACACCAAACCCTTCTTCCTCCTCCACCCACTCACACCTCTACTTATTGGCCTCATCTTCTGCCACAACCCTCCACTCAAACACTCCAACAACACAACAATTCTCCCACTGCAGTTTCACAACCTCAAACACCCAAATCAAGAAAAAGAAAAAATCAACAGAAGAAAATGGTGTGCCATGTAACCGCAGATAACCTCTCAGCAGATTTGTGGGCATGGCGCAAATACGGACAAAAACCAATTAAGGGTTCTCCGTATCCAAGGAACTACTATAGGTGCAGCAGCTCCAAAGGTTGTATGGCTCGAAAACAAGTTGAACGAAGTAACACTGAAACCGACATGTTCATCGTTACGTACACCGGGGACCACTCGCATCCCCGACCCACCCACCGGAACTCGCTCGCCGGAAGTACCCGGACCAAGACACCCACCTCCAATCCACCCTTGTCACCCACGCAAACCAGCAACCCCTTTTCTTCTTCTTCTTCGCCGCCACACTCTCCCACCACGCCGTCGGAAGACCCACCGGAAACCGCCGAAGAAGAACCCGACCCGGAAATGGAAACCGACGTCGAAGATGACGGTGACATTCGGTAA 843 0.4958 MAEDWDLFAIVRSCQSPTTPIPQTTTDTSSSTLNQQQQYDAFSFPNILQQPTTNELHQLFTPFNPTTTTSTTALTINPNYFPQHQTLLPPPPTHTSTYWPHLLPQPSTQTLQQHNNSPTAVSQPQTPKSRKRKNQQKKMVCHVTADNLSADLWAWRKYGQKPIKGSPYPRNYYRCSSSKGCMARKQVERSNTETDMFIVTYTGDHSHPRPTHRNSLAGSTRTKTPTSNPPLSPTQTSNPFSSSSSPPHSPTTPSEDPPETAEEEPDPEMETDVEDDGDIR 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02209 280 MobiDBLite consensus disorder prediction 83 139 - -
Cca02g02209 280 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 3 267 - -
Cca02g02209 280 SMART WRKY_cls 149 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca02g02209 280 MobiDBLite consensus disorder prediction 98 129 - -
Cca02g02209 280 Gene3D WRKY domain 132 203 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca02g02209 280 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 267 IPR044810 GO:0003700
Cca02g02209 280 ProSiteProfiles WRKY domain profile. 144 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca02g02209 280 SUPERFAMILY WRKY DNA-binding domain 144 210 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca02g02209 280 Pfam WRKY DNA -binding domain 151 208 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca02g02209 280 MobiDBLite consensus disorder prediction 212 249 - -
Cca02g02209 280 MobiDBLite consensus disorder prediction 257 280 - -
Cca02g02209 280 MobiDBLite consensus disorder prediction 166 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02209 Cca-Chr2 42597522 42598771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02209 2 269 WRKY Transcription Factor Family AT5G52830 44.948 8.64e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca02g02209 WRKY 3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02209 K13425 - gmx:100792164 291.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02209 02 42597522 42598771 Cca08g00739 08 13995048 13996432 ECH
Cca01g02328 01 51837452 51838739 Cca02g02209 02 42597522 42598771 ECH
Cca07g01953 07 46987144 46991966 Cca02g02209 02 42597522 42598771 ECH
Cca02g02209 02 42597522 42598771 Cca02g02209 02 42597522 42598771 ECH
Cca08g00739 08 13995048 13996432 Cca02g02209 02 42597522 42598771 PCT