Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02207 ATGGCTTCCGATTATGAGTTGAAGGCCAAAGAGGCTTTCGAAGATGATAACTCCGACTTATATGCTGACCGTGCCCAGGTCAAAATCAAACTCAACAACCTCACTGAGGCTGTTGCTGATGCAAACAAGGCGATTGAGTTGAATCCTTCTCACTCAAAAGCATATTACTATTTACTAAGCTTCGTGATGCAACTTTATTTGGAGTGCGATAAGCTGATTTCAGAAGAATCTGGTGTCATCATGCCCATTCAAGAAAAGACCACAACACAGTGTGATGCTACAAAAGCTTTTCAGCCAGAGAATGATCTTTCAGAGCCACCAACAGTGACAGTGGCTAAACCTAAATACAGGCATGGATTCTACCAGAAACCTGATGAGGTGGTTATTACCATATTTGCAAAGGGAATTCCAAGAGACAGCATTACTGTTTAG 432 0.419 MASDYELKAKEAFEDDNSDLYADRAQVKIKLNNLTEAVADANKAIELNPSHSKAYYYLLSFVMQLYLECDKLISEESGVIMPIQEKTTTQCDATKAFQPENDLSEPPTVTVAKPKYRHGFYQKPDEVVITIFAKGIPRDSITV 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02207 143 PANTHER PROTEIN SGT1 HOMOLOG 68 143 IPR044563 GO:0051087
Cca02g02207 143 PANTHER PHOSPHATASE-RELATED 68 143 - -
Cca02g02207 143 PANTHER PHOSPHATASE-RELATED 16 56 - -
Cca02g02207 143 PANTHER PROTEIN SGT1 HOMOLOG 16 56 IPR044563 GO:0051087
Cca02g02207 143 Gene3D - 106 143 IPR008978 -
Cca02g02207 143 SUPERFAMILY HSP20-like chaperones 107 143 IPR008978 -
Cca02g02207 143 ProSiteProfiles TPR repeat profile. 18 51 IPR019734 GO:0005515
Cca02g02207 143 Coils Coil 24 44 - -
Cca02g02207 143 SUPERFAMILY TPR-like 14 58 IPR011990 GO:0005515
Cca02g02207 143 SMART tpr_5 18 51 IPR019734 GO:0005515
Cca02g02207 143 Gene3D Tetratricopeptide repeat domain 7 65 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02207 Cca-Chr2 42582005 42583476 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02207 K12795 - gmx:100777554 192.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02207 02 42582005 42583476 Cca06g01820 06 33617173 33621249 ECH
Cca02g02207 02 42582005 42583476 Cca02g02207 02 42582005 42583476 ECH