Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02198 ATGGATGGAGACATCACAGCATGGACCTCGAACACCTCAGGTGCTGATGTGCAATTAGCAGTCATGTCAGAATCTGGCAACTTCATTCTCCAAAACACCAACAACCACACTGTGTGGCAGAGTTTTTCTCAACCTTCTGACACTCTCCTCCCAAACCAGCTTCTAAAAGTGTCTTCAGAACTAACTTCATCAAAGTCTTCCTCTCACGGTGGCTACTATGCTCTCAAAATGCTTCAACAGCCTACTTCCCTGAGCCTTGCTCTCACTTACAACCTCCCTGAGACTTTCCAAGCCTCAGATGAATCTTACTCCAACTATTCCTATTGGCAAGGCCCTGACATCTCCAATGTGACTGGGGAAGTTATAGCAGTTTTAGACCAAGCTGGGAGCTTTGGAATTGTGTATGGAGACTCATCTGATGGAGCAGTTTATGTGTATAAGAATGATGGTGATGATGCAGGCTTGTCTTCTGCAGTTCATCAATCTGCACCATTAACTGTTCTAAGGAGACTAACACTTGAAAATAATGGCAATCTGCGGTTGTATCGATGGGATGAGGTGAATGGTTCATGGCAGTGGGTGCCACAGTGGGCTGCAGTTTCAAATCCATGTGACATTGCTGGAATTTGTGGCAATGGGGTTTGTAATTTGGATAGAAGCAAGACAAAAGCCTCTTGCACTTGCTTGCCAGGAACTTCTAAAGTTGGCAGGGATGGCCAGTGCTATGAGAATTCTTCTCTTGTTGGAAAATGCAATGGCAAGCATGAAAACCTGACATCACAGTTTAGAATTTCAACTGTGCAGCAAACCAACTATTATTTTTCTGAATTTTCAGTAATAGCTAACTATAGTGATATTTCAAATGTGTCAAAATGTGGTGATGCTTGCTTGTTAGATTGTGATTGTGTGGCTTCTGTTTATGGGCTAAATGAGGAGAGACCTTATTGTTGGGTGTTGAGGAGCTTGAGTTTTGGTGGTTTTGAGGATACTAGCTCAACTTTGTTTGTGAAGGTCAGAGCTGGGTCATGGATTCCAGAAGGCCATGCAGGAGGGTCTAATAGTTCTTCAGATGGAATGGGCAGTGCAAAGGAAAAGGCTGTGATTATTCCTACTGTTTTGAGCATGGTAGTTCTCATTGTTTTGCTGTGTTTATTACTGTACTACAATGTTCACAGAAAAAGAACTTTGAAAAGGGAGATGGAGAGTTCCTTGATCTTATCCGGTGCTCCAATGAATTTCACCTACCGAGATTTGCAAATTAGGACATGCAACTTTTCACAGCTGCTAGGGACAGGTGGAtttgggagtgtgtataaaggaagcctgggagatggtaccctagtggcagtgaagaaacttgacagggttttccctcatggagagaaggaattcatcactgaagtaaacacaattggctcaatgcatcatatgaatttggttCGCCTGTGCGGCTATTGCTCAGAGGGATCACACAGGCTTCTGGTTTATGAGTTCATGAAGAATGGATCCTTGGATAAATGGATCTTCCCTTCATATCAAGGGAGAAATAGATTGCtagattggacaactcgtttcaacatagccatagctactgcacaagggattgcatactttcatgagcagtgtagggatcggataatacattgtgacatcaaaccggaaaatatattggtagatgaaaacttttgtcctaaagtatctgattttggactggccaaattgatgggaagggagcactctcatgtggtaacaatggtcagaggcactagaggttatttggcaccagaatgggttagtaatcgccctataactgtaaaagctgatgtttacagctatgggatgcttcttttagagatcattggtggtaggagaaaTCTTGACATGTCATTTGGTGCTGAGGACTTCTTTTACCCTGGTTGGGCTTACAAGGAGATGACAAATGGGTCAGTGTCACTAATTAAATTGGCAGATAGAAGATTAAATGGGGCAATTGATGAAGAAGAgttaataagagctctgaaagttgcattttggtgcatccaagatgaggtttccatgcgaccaaccatgggggaagtggtaaggatgctggaagattcaatcgacattaacatgcctccaatgccgcaaactgtactagagttaattgaggaaggcttaGACCATGTATACAAAGCCATGAAAAGAGAGTATAACCAGTTCAGTTCATTCACTAATACCAGCCATCTTACATCTCATGCCACATGTAGCAATTCCACAATGTCTCCAAGATAG 2274 0.3113 MDGDITAWTSNTSGADVQLAVMSESGNFILQNTNNHTVWQSFSQPSDTLLPNQLLKVSSELTSSKSSSHGGYYALKMLQQPTSLSLALTYNLPETFQASDESYSNYSYWQGPDISNVTGEVIAVLDQAGSFGIVYGDSSDGAVYVYKNDGDDAGLSSAVHQSAPLTVLRRLTLENNGNLRLYRWDEVNGSWQWVPQWAAVSNPCDIAGICGNGVCNLDRSKTKASCTCLPGTSKVGRDGQCYENSSLVGKCNGKHENLTSQFRISTVQQTNYYFSEFSVIANYSDISNVSKCGDACLLDCDCVASVYGLNEERPYCWVLRSLSFGGFEDTSSTLFVKVRAGSWIPEGHAGGSNSSSDGMGSAKEKAVIIPTVLSMVVLIVLLCLLLYYNVHRKRTLKREMESSLILSGAPMNFTYRDLQIRTCNFSQLLGTGGFGSVYKGSLGDGTLVAVKKLDRVFPHGEKEFITEVNTIGSMHHMNLVRLCGYCSEGSHRLLVYEFMKNGSLDKWIFPSYQGRNRLLDWTTRFNIAIATAQGIAYFHEQCRDRIIHCDIKPENILVDENFCPKVSDFGLAKLMGREHSHVVTMVRGTRGYLAPEWVSNRPITVKADVYSYGMLLLEIIGGRRNLDMSFGAEDFFYPGWAYKEMTNGSVSLIKLADRRLNGAIDEEELIRALKVAFWCIQDEVSMRPTMGEVVRMLEDSIDINMPPMPQTVLELIEEGLDHVYKAMKREYNQFSSFTNTSHLTSHATCSNSTMSPR 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02198 757 Pfam S-locus glycoprotein domain 160 232 IPR000858 GO:0048544
Cca02g02198 757 SUPERFAMILY alpha-D-mannose-specific plant lectins 2 59 IPR036426 -
Cca02g02198 757 Gene3D Transferase(Phosphotransferase) domain 1 499 712 - -
Cca02g02198 757 Pfam Protein kinase domain 426 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02198 757 SUPERFAMILY Protein kinase-like (PK-like) 401 697 IPR011009 -
Cca02g02198 757 Gene3D Phosphorylase Kinase; domain 1 387 498 - -
Cca02g02198 757 PANTHER OS07G0415500 PROTEIN 1 757 - -
Cca02g02198 757 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 1 757 - -
Cca02g02198 757 SMART serkin_6 423 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02198 757 CDD STKc_IRAK 429 698 - -
Cca02g02198 757 ProSiteProfiles Protein kinase domain profile. 423 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02198 757 Gene3D - 2 41 IPR036426 -
Cca02g02198 757 ProSiteProfiles Bulb-type lectin domain profile. 1 43 IPR001480 -
Cca02g02198 757 PIRSF SRK 1 749 IPR024171 GO:0004674
Cca02g02198 757 ProSitePatterns Protein kinases ATP-binding region signature. 429 452 IPR017441 GO:0005524
Cca02g02198 757 Pfam D-mannose binding lectin 6 60 IPR001480 -
Cca02g02198 757 ProSitePatterns Serine/Threonine protein kinases active-site signature. 546 558 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02198 Cca-Chr2 42486545 42490314 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02198 377 707 Receptor kinase-like Gene Family AT5G20050 42.458 1.68e-79 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Cca02g02198 Pkinase 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02198 - - gmx:100775424 1416.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02198 02 42486545 42490314 Cca02g02198 02 42486545 42490314 ECH