Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca02g02198 | ATGGATGGAGACATCACAGCATGGACCTCGAACACCTCAGGTGCTGATGTGCAATTAGCAGTCATGTCAGAATCTGGCAACTTCATTCTCCAAAACACCAACAACCACACTGTGTGGCAGAGTTTTTCTCAACCTTCTGACACTCTCCTCCCAAACCAGCTTCTAAAAGTGTCTTCAGAACTAACTTCATCAAAGTCTTCCTCTCACGGTGGCTACTATGCTCTCAAAATGCTTCAACAGCCTACTTCCCTGAGCCTTGCTCTCACTTACAACCTCCCTGAGACTTTCCAAGCCTCAGATGAATCTTACTCCAACTATTCCTATTGGCAAGGCCCTGACATCTCCAATGTGACTGGGGAAGTTATAGCAGTTTTAGACCAAGCTGGGAGCTTTGGAATTGTGTATGGAGACTCATCTGATGGAGCAGTTTATGTGTATAAGAATGATGGTGATGATGCAGGCTTGTCTTCTGCAGTTCATCAATCTGCACCATTAACTGTTCTAAGGAGACTAACACTTGAAAATAATGGCAATCTGCGGTTGTATCGATGGGATGAGGTGAATGGTTCATGGCAGTGGGTGCCACAGTGGGCTGCAGTTTCAAATCCATGTGACATTGCTGGAATTTGTGGCAATGGGGTTTGTAATTTGGATAGAAGCAAGACAAAAGCCTCTTGCACTTGCTTGCCAGGAACTTCTAAAGTTGGCAGGGATGGCCAGTGCTATGAGAATTCTTCTCTTGTTGGAAAATGCAATGGCAAGCATGAAAACCTGACATCACAGTTTAGAATTTCAACTGTGCAGCAAACCAACTATTATTTTTCTGAATTTTCAGTAATAGCTAACTATAGTGATATTTCAAATGTGTCAAAATGTGGTGATGCTTGCTTGTTAGATTGTGATTGTGTGGCTTCTGTTTATGGGCTAAATGAGGAGAGACCTTATTGTTGGGTGTTGAGGAGCTTGAGTTTTGGTGGTTTTGAGGATACTAGCTCAACTTTGTTTGTGAAGGTCAGAGCTGGGTCATGGATTCCAGAAGGCCATGCAGGAGGGTCTAATAGTTCTTCAGATGGAATGGGCAGTGCAAAGGAAAAGGCTGTGATTATTCCTACTGTTTTGAGCATGGTAGTTCTCATTGTTTTGCTGTGTTTATTACTGTACTACAATGTTCACAGAAAAAGAACTTTGAAAAGGGAGATGGAGAGTTCCTTGATCTTATCCGGTGCTCCAATGAATTTCACCTACCGAGATTTGCAAATTAGGACATGCAACTTTTCACAGCTGCTAGGGACAGGTGGAtttgggagtgtgtataaaggaagcctgggagatggtaccctagtggcagtgaagaaacttgacagggttttccctcatggagagaaggaattcatcactgaagtaaacacaattggctcaatgcatcatatgaatttggttCGCCTGTGCGGCTATTGCTCAGAGGGATCACACAGGCTTCTGGTTTATGAGTTCATGAAGAATGGATCCTTGGATAAATGGATCTTCCCTTCATATCAAGGGAGAAATAGATTGCtagattggacaactcgtttcaacatagccatagctactgcacaagggattgcatactttcatgagcagtgtagggatcggataatacattgtgacatcaaaccggaaaatatattggtagatgaaaacttttgtcctaaagtatctgattttggactggccaaattgatgggaagggagcactctcatgtggtaacaatggtcagaggcactagaggttatttggcaccagaatgggttagtaatcgccctataactgtaaaagctgatgtttacagctatgggatgcttcttttagagatcattggtggtaggagaaaTCTTGACATGTCATTTGGTGCTGAGGACTTCTTTTACCCTGGTTGGGCTTACAAGGAGATGACAAATGGGTCAGTGTCACTAATTAAATTGGCAGATAGAAGATTAAATGGGGCAATTGATGAAGAAGAgttaataagagctctgaaagttgcattttggtgcatccaagatgaggtttccatgcgaccaaccatgggggaagtggtaaggatgctggaagattcaatcgacattaacatgcctccaatgccgcaaactgtactagagttaattgaggaaggcttaGACCATGTATACAAAGCCATGAAAAGAGAGTATAACCAGTTCAGTTCATTCACTAATACCAGCCATCTTACATCTCATGCCACATGTAGCAATTCCACAATGTCTCCAAGATAG | 2274 | 0.3113 | MDGDITAWTSNTSGADVQLAVMSESGNFILQNTNNHTVWQSFSQPSDTLLPNQLLKVSSELTSSKSSSHGGYYALKMLQQPTSLSLALTYNLPETFQASDESYSNYSYWQGPDISNVTGEVIAVLDQAGSFGIVYGDSSDGAVYVYKNDGDDAGLSSAVHQSAPLTVLRRLTLENNGNLRLYRWDEVNGSWQWVPQWAAVSNPCDIAGICGNGVCNLDRSKTKASCTCLPGTSKVGRDGQCYENSSLVGKCNGKHENLTSQFRISTVQQTNYYFSEFSVIANYSDISNVSKCGDACLLDCDCVASVYGLNEERPYCWVLRSLSFGGFEDTSSTLFVKVRAGSWIPEGHAGGSNSSSDGMGSAKEKAVIIPTVLSMVVLIVLLCLLLYYNVHRKRTLKREMESSLILSGAPMNFTYRDLQIRTCNFSQLLGTGGFGSVYKGSLGDGTLVAVKKLDRVFPHGEKEFITEVNTIGSMHHMNLVRLCGYCSEGSHRLLVYEFMKNGSLDKWIFPSYQGRNRLLDWTTRFNIAIATAQGIAYFHEQCRDRIIHCDIKPENILVDENFCPKVSDFGLAKLMGREHSHVVTMVRGTRGYLAPEWVSNRPITVKADVYSYGMLLLEIIGGRRNLDMSFGAEDFFYPGWAYKEMTNGSVSLIKLADRRLNGAIDEEELIRALKVAFWCIQDEVSMRPTMGEVVRMLEDSIDINMPPMPQTVLELIEEGLDHVYKAMKREYNQFSSFTNTSHLTSHATCSNSTMSPR | 757 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca02g02198 | 757 | Pfam | S-locus glycoprotein domain | 160 | 232 | IPR000858 | GO:0048544 | |
Cca02g02198 | 757 | SUPERFAMILY | alpha-D-mannose-specific plant lectins | 2 | 59 | IPR036426 | - | |
Cca02g02198 | 757 | Gene3D | Transferase(Phosphotransferase) domain 1 | 499 | 712 | - | - | |
Cca02g02198 | 757 | Pfam | Protein kinase domain | 426 | 634 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cca02g02198 | 757 | SUPERFAMILY | Protein kinase-like (PK-like) | 401 | 697 | IPR011009 | - | |
Cca02g02198 | 757 | Gene3D | Phosphorylase Kinase; domain 1 | 387 | 498 | - | - | |
Cca02g02198 | 757 | PANTHER | OS07G0415500 PROTEIN | 1 | 757 | - | - | |
Cca02g02198 | 757 | PANTHER | G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT | 1 | 757 | - | - | |
Cca02g02198 | 757 | SMART | serkin_6 | 423 | 701 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cca02g02198 | 757 | CDD | STKc_IRAK | 429 | 698 | - | - | |
Cca02g02198 | 757 | ProSiteProfiles | Protein kinase domain profile. | 423 | 701 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cca02g02198 | 757 | Gene3D | - | 2 | 41 | IPR036426 | - | |
Cca02g02198 | 757 | ProSiteProfiles | Bulb-type lectin domain profile. | 1 | 43 | IPR001480 | - | |
Cca02g02198 | 757 | PIRSF | SRK | 1 | 749 | IPR024171 | GO:0004674 | |
Cca02g02198 | 757 | ProSitePatterns | Protein kinases ATP-binding region signature. | 429 | 452 | IPR017441 | GO:0005524 | |
Cca02g02198 | 757 | Pfam | D-mannose binding lectin | 6 | 60 | IPR001480 | - | |
Cca02g02198 | 757 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 546 | 558 | IPR008271 | GO:0004672|GO:0006468 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca02g02198 | Cca-Chr2 | 42486545 | 42490314 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca02g02198 | 377 | 707 | Receptor kinase-like Gene Family | AT5G20050 | 42.458 | 1.68e-79 | 260 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_SD-2b | Cca02g02198 | Pkinase | 1.6e-46 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca02g02198 | - | - | gmx:100775424 | 1416.36 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca02g02198 | 02 | 42486545 | 42490314 | Cca02g02198 | 02 | 42486545 | 42490314 | ECH |