Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02188 ATGGCGGGTTTTTGGAGCGTGTTTTGTGGGGAATTTGATTGTTCAGAGGCTGGAAGAAAGCTTTGCAGTTATGATTTGAGGCTTCTCATTGATCCTTCCACCTGTGTCAACCATTTATTGATCTCTTGCTTTGATGTACTGCTGCTTATCATGCTTTTATTCATTATGATTCAGAAGTCAACATTAAAACCGTCTCATGGTCAAACACAGGTGCAAAGATATTCATATTTTCAGCTACTTTCTGCCATGGCCAACGGTGCTCTTGGGTTGGCGCATTTGTGCTTAGGCATTTGGGATTTACAGGAATGTTTGGGGAAAACACAAACTGTGTTGCCTCTTAATGGGTGGTTGCTAGAAATATTTCATGGATTAATATGGTTGTTTGTGAGTTTTATGATAAGTCTTAAGTTGAAACGACTTCCAAGAGCACTGTCAAGGCTTTCTTCTATTCTAATCTTCTTGGTGTCTGGTATTTTCTGTGTTTCATCATTGTTTTATGCTATTAGTAGCAGAGAAGTATCCCTTAAGGTAGTTTTAGATATTCTATCTTTTCCCGGGGCAATATTTTTGTTATTATGCACGTATAAGGAATCCAAGTATAAGGACACTGACAATGAAGTTGATGAAAGTCTTTATGCACCCTTAAATGGTCAGTCCAATAAAAACGGTTCAACTAGATATGTAACCTCATTTGCCAAAACTGGATTCTTCAGCAGAATGTCATTTTGGTGGTTGAATCCATTGATGAAAATAGGAAAAGAGAAAACACTTCAGGATGAAGACATTCCAAAGTTGCGGGAGGAGGATCAAGCAGAAAGTTGTTATTTGCTGTTTCGGGATCAATTGAACAGACAGAAACAGAAGGACCCATCCTCTCAGCCATCAGTTTTGAGGACAATAATTTTATGCCATTGGAGAGAAATTTTAATATCAGGATTCTTTGCAGTGCTTAAGGTACTTGCTCAGTCTTCAGGACCTCTTCTTCTGAATTCTTTTATATTGGTTTCTGAGGGTAACGAGAGTTTCAAATATGAAGGTTTTGTGTTGGCCATTTCACTTTTCTTTGCAAAAACCATAGAATCCTTATCACAAAGGCAATGGTACTTCCGCTGCAGACTTATTGGCCTGAAAGTTAGGTCATTGCTAACTGCCGCAATTTATAGAAAGCAATTGAGGTTATCCAATTCTGCTAGATTGATGCACTCTGGTGGCGAGATAATGAATTACGTGACTGTGGATGCTTATAGAATTGGTGAATTTCCCTATTGGTTTCACCAGACTTGGACAACTAGCTTTCAGCTATGTATCTCATTAGTAATACTTTTTCGTGCTGTTGGGATGGCAACAATTGCCTCCTTGGTGGTGATAGTAATCACAGTGCTTTGCAATACTCCACTTGCAAAGTTACAACACAAGTTTCAAAGCAAACTTATGGTGGCACAAGATGAGAGATTGAAGGCTTGTTCTGAGGCTCTTGTGAATATGAAGGTGTTGAAGTTATATGCGTGGGAAACCAACTTTAGAAATGCTATAGAGAGATTAAGGAATGAGGAACTCAAATGGTTATCTGCTGTGCAATTAAGAAAGGCATACAGCACCTTTCTCTTTTGGTCCTCCCCTGTTTTGGTCTCTGCTGCTTCCTTTGGGGCATGTTACTTTCTCAATGTTCCATTACATGCAAATAATGTTTTCACTTTTGTGGCAACTTTGCGCCTTGTTCAAGATCCTATTAGAGTCATCCCTGATGTTATTGGGGTAATCATTCAGGCAAAAGTTGCATTTTCTCGAATTGTAAAATTCCTGGAGGCACCGGAACTTCTGAGTGCAAATGTCACAAAGAGGTCTCTCAATGACAATATGAGGGGTTCGATTTTAATCAAGTCTGCTGATTTTTCATGGGAAGATAATGTATCAAAGCCAACACTGAGAAACATAAATTTGGAGGTTAGACCTGGGCAAAAGATGGCAATCTGTGGAGAGGTTGGCTCAGGCAAATCAACTCTCTTAGCAGCAATTCTCAGAGAAGTTCCTAATACTCGGGGGACAATTGAAGTTTATGGGAAGTTTGCCTATGTTTCTCAAACAGCATGGATACAGTCAGGTACAATTCGAGAGAATATATTGTTTGGAGTAGCCATGGATTCTGAAAAATATCAAGAAACACTTCACAGGTCTTCCCTATTGAAGGACCTTGAGTTGTTTCCTCACGGTGATCTCACTGAAATAGGAGAGAGAGGAGTCAACCTGAGTGGAGGTCAGAAGCAGCGAATTCAACTTGCACGAGCTCTATATCAGAATGCTGATATATACCTCCTAGATGACCCATTCAGTGCTGTCGATGCACATACTGCAACAAATTTGTTTAATGAATACATAATGGAAGGACTTGCTGGGAAGACAGTCTTGCTCGTGACTCATCAAGTTGATTTCCTTCCGGCGTTTGATTCTGTTTTGTTGATGTCAGATGCGGAAATCATAGAAGCTGCTCCTTATGGCTATTTGTTGAGCTCAAGCCAAGCATTTCAGGAACTAGTGAATGCACACAAAGAGACTGCAGGTACTGACCGGCTTGTGGATGTTACTTCTTCTCAGAAACATTCAAATAGGGCTGGAGAAATTAGAAAAACACATACGGAGCAGCATTATGAAGCATCAAAAGGTGATCAATTGATTAAGAAAGAAGAGAGAGAGAAAGGAGACCAAGGGTTCAAACCATATATACAGTATCTTAATCAGAACAAAGGATATATATACTTCTCTGTGGCTGCTCTTTGTCAACTAACATTTGTGGTTGGCCAAACATTGCAGAACTCATGGATGGCCGCAAATGTTGACAATCCTCAAGTCAGCACTTTGCAATTGATTCTAGTTTACTTGTTCATTGGAATTATTTCAACAATGTTCTTGTTGATAAGAAGTCTTACTACAGTTGCTTTGTGTCTTCGTTCATCAAAGTCTCTATTTTTACAGCTACTGTACTCCCTTTTCCGTGCCCCCATGTCATTTTATGACTCCACTCCTTTAGGACGGATACTTAGCAGGGTCTCCTCAGATCTCAGCATTGTGGACCTTGATGTCCCATTCGGCATTCTTTTCGCAGTGGCACCTACTATGAACTTTTATGCTAGTCTTGCAGTTTTAGCCGTTGTTACTTGGCAAGTTTTGTTTGTCTCCATACCAATGATTTGTTTTGCAATCCGCTTGCAGAGATATTACTTTGCCTCTGCAAAAGAACTGATGAGGATGAATGGCACAACAAAATCCTTTGTGGCTAACCATCTTGCTGAATCCGCCGCTGGGGCTGTGACAATAAGGGCTTTTGACGAGGAAGATCGTTTTTTTCAAAAAAGTCTTGATCTAATTGATGTCAATGCTAGCCCGTTCTTCCATAGTTTTGCAGCAAATGAGTGGTTGATTCAACGGTTAGAAACAGTCAGTGCAGTGGTTCTTGCATCTGCAGCACTTTTCATGGTTGTACTTCCACCTGGAACTTGCACCTCTGGATTTATTGGCATGGCTCTCTCTTATGGCCTTTCACTTAACAGTTCCTTGGTACTTTCGATTCAAAATCAATGCAATATAGCGAATAATATAATATCAGTGGAGAGGCTAAATCAGTATATGCATATACCAAGTGAAGCTCCAGAAGTAATAGAAGGAAAACGTCCTCCTGTAAATTGGCCTATTGCTGGTAGAGTAGAAATAAATGAATTGCAGATACGTTACAGGCCAGATGCACCACTAGTACTCCGTGGGATCACATGCACATTTGAAGGAGGGCACAAAATTGGTATTGTTGGCCGGACAGGCTGTGGGAAGTCCACTCTTATAGGTGCTTTATTCCGTCTTGTGGAGCCAGCAGGTGGAAAAATCATTGTTGATGGCATTGACATTAGCTCCATTGGTCTCCATGATTTGAGGTCGCGTTTTGGTATTATACCTCAGGATCCTACTCTTTTTAATGGCACAGTCAGATACAATTTGGACCCCTTATCTCAACACTCTGATCAAGAGATATGGGAGGTTCTTGGGAAGTGTCAGTTGCAAGAGGCTGTCCAAGAGAAAGAAGAGGGATTAGACTCTTCAGTTGTTGAAGCTGGAGCAAACTGGAGCATGGGACAACGACAGCTATTCTGTTTGGGGCGTGCTCTTCTCAGGAGAAGTCGGATATTGGTGCTTGATGAAGCAACTGCGTCAATTGATAATGCAACTGATTTGATTTTGCAGAAAAGCATTAGGACAGAGTTTGCAGATTGTACGGTGATCACGGTAGCTCACAGGATACCAACTGTGATGGATTGCACCAAGGTTCTTGCCATCAGTGATGGGAAACTGGTGGAGTATGATGAGCCAATGAAGTTGATAAAGAGAGAAGGATCACTGTTTGGGAAGCTTGTCAAGGAATATTGGTCTCATTTCCAGTCTGCTGAATCTCATTGGATCTGA 4446 0.4085 MAGFWSVFCGEFDCSEAGRKLCSYDLRLLIDPSTCVNHLLISCFDVLLLIMLLFIMIQKSTLKPSHGQTQVQRYSYFQLLSAMANGALGLAHLCLGIWDLQECLGKTQTVLPLNGWLLEIFHGLIWLFVSFMISLKLKRLPRALSRLSSILIFLVSGIFCVSSLFYAISSREVSLKVVLDILSFPGAIFLLLCTYKESKYKDTDNEVDESLYAPLNGQSNKNGSTRYVTSFAKTGFFSRMSFWWLNPLMKIGKEKTLQDEDIPKLREEDQAESCYLLFRDQLNRQKQKDPSSQPSVLRTIILCHWREILISGFFAVLKVLAQSSGPLLLNSFILVSEGNESFKYEGFVLAISLFFAKTIESLSQRQWYFRCRLIGLKVRSLLTAAIYRKQLRLSNSARLMHSGGEIMNYVTVDAYRIGEFPYWFHQTWTTSFQLCISLVILFRAVGMATIASLVVIVITVLCNTPLAKLQHKFQSKLMVAQDERLKACSEALVNMKVLKLYAWETNFRNAIERLRNEELKWLSAVQLRKAYSTFLFWSSPVLVSAASFGACYFLNVPLHANNVFTFVATLRLVQDPIRVIPDVIGVIIQAKVAFSRIVKFLEAPELLSANVTKRSLNDNMRGSILIKSADFSWEDNVSKPTLRNINLEVRPGQKMAICGEVGSGKSTLLAAILREVPNTRGTIEVYGKFAYVSQTAWIQSGTIRENILFGVAMDSEKYQETLHRSSLLKDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTATNLFNEYIMEGLAGKTVLLVTHQVDFLPAFDSVLLMSDAEIIEAAPYGYLLSSSQAFQELVNAHKETAGTDRLVDVTSSQKHSNRAGEIRKTHTEQHYEASKGDQLIKKEEREKGDQGFKPYIQYLNQNKGYIYFSVAALCQLTFVVGQTLQNSWMAANVDNPQVSTLQLILVYLFIGIISTMFLLIRSLTTVALCLRSSKSLFLQLLYSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVPFGILFAVAPTMNFYASLAVLAVVTWQVLFVSIPMICFAIRLQRYYFASAKELMRMNGTTKSFVANHLAESAAGAVTIRAFDEEDRFFQKSLDLIDVNASPFFHSFAANEWLIQRLETVSAVVLASAALFMVVLPPGTCTSGFIGMALSYGLSLNSSLVLSIQNQCNIANNIISVERLNQYMHIPSEAPEVIEGKRPPVNWPIAGRVEINELQIRYRPDAPLVLRGITCTFEGGHKIGIVGRTGCGKSTLIGALFRLVEPAGGKIIVDGIDISSIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHSDQEIWEVLGKCQLQEAVQEKEEGLDSSVVEAGANWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKSIRTEFADCTVITVAHRIPTVMDCTKVLAISDGKLVEYDEPMKLIKREGSLFGKLVKEYWSHFQSAESHWI 1481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02188 1481 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 626 847 IPR003439 GO:0005524
Cca02g02188 1481 Gene3D - 1217 1468 IPR027417 -
Cca02g02188 1481 CDD ABC_6TM_ABCC_D2 915 1208 IPR044726 GO:0140359
Cca02g02188 1481 Pfam ABC transporter 1250 1398 IPR003439 GO:0005524
Cca02g02188 1481 Pfam ABC transporter 642 776 IPR003439 GO:0005524
Cca02g02188 1481 SUPERFAMILY ABC transporter transmembrane region 297 602 IPR036640 GO:0005524|GO:0016021
Cca02g02188 1481 SMART AAA_5 1259 1451 IPR003593 -
Cca02g02188 1481 SMART AAA_5 651 824 IPR003593 -
Cca02g02188 1481 Pfam ABC transporter transmembrane region 308 574 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca02g02188 1481 Pfam ABC transporter transmembrane region 917 1159 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca02g02188 1481 CDD ABCC_MRP_domain1 624 822 - -
Cca02g02188 1481 Gene3D ABC transporter type 1, transmembrane domain 881 1214 IPR036640 GO:0005524|GO:0016021
Cca02g02188 1481 Gene3D ABC transporter type 1, transmembrane domain 279 601 IPR036640 GO:0005524|GO:0016021
Cca02g02188 1481 ProSitePatterns ABC transporters family signature. 749 763 IPR017871 GO:0005524
Cca02g02188 1481 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 74 1479 - -
Cca02g02188 1481 Gene3D - 602 870 IPR027417 -
Cca02g02188 1481 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 927 1196 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca02g02188 1481 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 74 1479 - -
Cca02g02188 1481 CDD ABCC_MRP_domain2 1231 1451 - -
Cca02g02188 1481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1223 1460 IPR027417 -
Cca02g02188 1481 CDD ABC_6TM_ABCC_D1 310 597 IPR044746 GO:0140359
Cca02g02188 1481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 618 847 IPR027417 -
Cca02g02188 1481 SUPERFAMILY ABC transporter transmembrane region 914 1213 IPR036640 GO:0005524|GO:0016021
Cca02g02188 1481 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1235 1467 IPR003439 GO:0005524
Cca02g02188 1481 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 309 589 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02188 Cca-Chr2 42395822 42403500 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02188 618 876 Calmodulin-binding Proteins AT2G36910 29.137 2.76e-23 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02188 K05666 - gmx:100811468 2580.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00768 08 15005923 15013913 Cca02g02188 02 42395822 42403500 PCT