Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02187 ATGGCAGGTTTTTGGAGCATGTTTTGTGGGGAATCTGGTTGCTCAGAGGATGGAAGAAAGCCTTGTAGTTATGATTATAGACTTCTCATTGATCCTTCCACCTGCATCAACCATTTGTTGATCTCTTGCTTTGATGTATTGCTGCTTATCATGCTTGTACTCATTATGGTCCAAAAGTCAACGTTAAAACCATCTCGGGGTCAAACACGGGGGGTGCGAAGATATTCATATTTTCAGCTAGTTTCTGCCATAGCCAATGGTGCTCTTGGGTTGGCGCATTTGTGCTTAGGCATTTGGGTTTTAGAGGAAAGGTATAGGAAAACCCAAACTGTGTTTCCTCTTAATTGGTGGTTGCTTGAAATCTTTCACGGATTAACATGGTTGTTAGTGAGTTTAACGATAAGTCTCAAGCTAAAACAACTTCCAAGAGCTTTGACAAGGCTTTTTTCCGTTCTCATCTTATTGGTTTCTGGTATTTTCTGCGCTTCATCCTTGTTTTATGCAATTAGCAGCAGAGAACCGTCCCTTAAGATGGTTTCAGATATGCTATCTTTTCCAGGAGCAATATTGTTGTTATTATGCACATATAAGGAATCCACGTATAAGGACACTGACAATGAAGTTGATGAAAGTCTTTATGCACCTTTAAATGGCGAGTCCAATAAAAAGGATTCCATTAGATATGTAACCCCATTTGCCAGAGCTGGATTCCTCAGCGGAATGTCATTTTGGTGGTTGAATCAGTTGATGAAAATGGGAAAAGAGAAAACACTTCAGGATGAAGACATTCCAAGGTTGCGGGAGAAGGATCGAGCAGAAAGTTGTTATTTGCTGTTTCTGGACCAATTGAACAGACAGAAACAGAAGGATCCATTTTCAGAGCCATCGGTTCTGAGGACAATACTTTTATGCCATTGGAAAGAAATTTTAATATCAGGATTCTTTGCACTGCTTAAGGTACTTTCTCTGTCTTCAGGACCTCTTCTTCTGAATTCTTTTATATTGGTTGCTGAGGGTAATGAGAGTTTCAAATATGAAGGTTTTGTGTTGGCCGTATCACTTTTCTCTGCAAAAATCATAGAATCCTTATCACAAAGGCAGTGGTACTTCCGCTGCAGACTTATTGGCCTGAAAGTTAGGTCGTTGCTAACTGCAGCGATCTATAGAAAGCAATTGAGGTTATCCAATTCTGCTAGATTGATGCACTCTGGTGGCGAGATAATGAATTATGTGACTGTGGATGCTTATAGAATTGGTGAATTTCCCTATTGGTTTCACCAGACTTGGACAACTAGCTTTCAGCTATGTATCTCATTAGTGATACTTTTTCGTGCTGTTGGGATGGCAACAATTGCCTCCTTGGTGGTGATAGTAATCACAGTGCTTTGCAATACTCCACTTGCAAAGTTGCAACACAAGTTTCAAAGCAAACTTATGGTGGCACAAGATGAGAGATTGAAGGCTTGTTCTGAGGCTCTTGTGAATATGAAGGTGTTGAAGTTATATGCGTGGGAAACCAACTTTAGAAATGCTATAGAGAGATTAAGGAATGAGGAACTCAAATGGTTATCTGCTGTGCAATTAAGAAAGGCATACAACACCTTTCTCTTTTGGTCCTCCCCTGTTTTGGTCTCTGCTGCTTCCTTTGGGGCATGTTACTTTCTTAATGTTCCATTACATGCAAATAATGTTTTCACTTTCGTGGCAACTTTGCGCCTTGTTCAAGATCCTATTAGAACCATCCCTGATGTTATTGGGGTAATCATTCAGGCAAAAGTTGCTTTTACTCGAATTGTAAAATTCCTGGAGGCACCTGAACTTCAGAGTACTAATGTCACAAAAAGGTCTCTCAATGACAATATGAGGGGTTCAATTTTAATCAAGTCTGCTGATTTTTCATGGGTAGATAATGTATCAAAGCCAACACTGAGAAACATAAATTTGGAGGTTAGACCTGGGCAAAAGATGGCAATCTGTGGAGAGGTTGGCTCAGGCAAATCAACTCTCTTAGCAGCAATTCTCAGAGAAGTTCCTAATACTCGGGGGACAATACAAGTTTCTGGGAAGTTTGCCTATGTTTCTCAAACAGCATGGATACAGACAGGTACTATACGGGAGAATATATTGTTTGGAGCAGCCATGGATGCTGAAAAATATCGACAAACACTTCATAGGTCTTCGCTATTGAAGGACCTTGAGTTGTTTCCTCACGGTGATCTCACTGAAATAGGCGAAAGGGGGGTCAACTTGAGTGGAGGTCAGAAGCAGCGAATTCAACTTGCACGAGCTCTATATCAGAACGCTGATATATACCTCTTGGATGACCCTTTCAGTGCTGTTGACGCACATACTGCCACAAATTTGTTTAATGAATACATAATGGGAGGACTTGCTGGGAAAACAGTCTTGCTTGTGACTCATCAAGTTGACTTCCTTCCAGCATTTGATTCTGTTTTGTTGATGTCAGATGGGGAAATCATAGAAGCTGCTCCTTATCACCATTTGTTGAGCTCGAGCCATGCATTTCAGGAACTCGTGAATGCACACAAAGAGACTGCGGGTTCTGACCGGCTTGTAGATGTTACTTCTTCTCAGAAGCATTCAAATAGTGCTAGAGAGATTAAAAAAACATATATGGAGAATCATTTTGAAGCATCTAAAGGCGATCAATTGATTAAGCAAGAAGAGAGAGAAAAAGGAGACCAAGGGTTTAAACCATATATACAGTATCTGAATCAGAACAAAGGATATATATACTTCTCTGTTGCTGCTCTTTCTCACCTAACATTTGTAGTTGGTCAAATATTGCAAAACACATGGATGGCTGATAGTGTTGACAATCCTCGAGTTAGCAGTTTGCAATTGATTCTAGTTTACTTGTTAATTGGAGTTATTTCAACAATATTCTTGTTGGTGAGAAGTCTTGTTGCAGTTGCTTTGGGTCTTCAATCATCAAAGTCTTTATTTTTTCAGCTACTGAACTCTCTTTTTCGTGCCCCCATGGCATTTTATGATTCCACTCCTTTAGGACGGATACTCAGCAGGGTCTCCTCAGATCTCAGCATTGTGGACCTTGACGTTCCATTCGGCTTTCTATTTTCTGTGGGAGCAACTATGAATTGTTATGCTAATCTTACGGTTTTAGCCGTTGTAACTTGGCAAGTCTTGTTTGTCTCCATACCAATGATTTATTTTGCAATCCGCTTACAGAGATATTACTTTGCCTCTGCAAAAGAGCTGATGAGGATGAATGGCACAACAAAATCCTTTGTGGCTAACCATCTAGCTGAATCTGTCGCTGGGGCTGTGACAATAAGGGCCTTTGACGAGGAAGATCGTTTTTTCAAGAAAAATCTTGATCTAATTGATGTCAATGCTAGCCCGTTCTTCCATAGTTTTGCAGCAAATGAGTGGTTGATTCAACGGTTAGAAACAGTCAGTGCAGTGGTTCTTGCATCTGCAGCACTTTGCATGGTTGTACTTCCACCTGGAACTTTCACCTCTGGATTTATTGGCATGGCTCTCTCTTATGGCCTTTCACTTAACAATTCCTTGGTATTTTCGATTCAAAATCAATGCAATATAGCAAATAATATAATATCAGTGGAGAGGCTAAATCAGTATATGCATATACCCAGTGAGGCCCCAGAAGTAATAGAAGGAAATCGTCCTCCTGTAAATTGGCCTGTTGCTGGTAGAGTACAAATAAATGCATTGCAGATACGTTATAGGCCGGATGCACCACTAGTACTCCGTGGGATCACATGCACATTTGAAGGACGACACAAAATTGGTATTGTTGGCCGGACAGGCAGCGGGAAGTCCACTCTTATAGGTGCTTTATTCCGTCTTGTGGAGCCAGCAGGTGGAAAGATCATTGTTGATGGCATTGACATTAGCTCCATTGGTCTCCATGATTTGAGGTCGCGTTTTGGTATTATACCTCAGGATCCTACTCTTTTTAATGGCACAGTCAGATACAATTTGGACCCCTTATCTCAACACTCTGATCAAGAGTTATGGGAGGTTCTTGGGAAGTGTCAGTTGCAAGAGGCTGTCCAAGAGAAAGAAGAGGGATTAGACTCTTCAGTTGTTGAAGCTGGAGCAAACTGGAGCATGGGACAACGACAGCTATTCTGTTTGGGGCGTGCTCTTCTCAGGAGAAGTCGGATATTGGTGCTTGATGAAGCAACTGCGTCAATTGATAATGCAACTGATTTGATTTTGCAGAAAAGCATTAGGACAGAGTTTGCAGATTGTACGGTGATCACGGTAGCTCACAGGATACCAACTGTGATGGATTGCACCAAGGTTCTTGCCATCAGTGATGGGAAACTGGTGGAGTATGATGAGCCAATGAAGTTGATAAAGAGAGAAGGATCACTGTTTGGGAAGCTTGTCAAGGAATATTGGTCTCATTTCCAGTCTGCAGAATCTCATTGA 4443 0.4114 MAGFWSMFCGESGCSEDGRKPCSYDYRLLIDPSTCINHLLISCFDVLLLIMLVLIMVQKSTLKPSRGQTRGVRRYSYFQLVSAIANGALGLAHLCLGIWVLEERYRKTQTVFPLNWWLLEIFHGLTWLLVSLTISLKLKQLPRALTRLFSVLILLVSGIFCASSLFYAISSREPSLKMVSDMLSFPGAILLLLCTYKESTYKDTDNEVDESLYAPLNGESNKKDSIRYVTPFARAGFLSGMSFWWLNQLMKMGKEKTLQDEDIPRLREKDRAESCYLLFLDQLNRQKQKDPFSEPSVLRTILLCHWKEILISGFFALLKVLSLSSGPLLLNSFILVAEGNESFKYEGFVLAVSLFSAKIIESLSQRQWYFRCRLIGLKVRSLLTAAIYRKQLRLSNSARLMHSGGEIMNYVTVDAYRIGEFPYWFHQTWTTSFQLCISLVILFRAVGMATIASLVVIVITVLCNTPLAKLQHKFQSKLMVAQDERLKACSEALVNMKVLKLYAWETNFRNAIERLRNEELKWLSAVQLRKAYNTFLFWSSPVLVSAASFGACYFLNVPLHANNVFTFVATLRLVQDPIRTIPDVIGVIIQAKVAFTRIVKFLEAPELQSTNVTKRSLNDNMRGSILIKSADFSWVDNVSKPTLRNINLEVRPGQKMAICGEVGSGKSTLLAAILREVPNTRGTIQVSGKFAYVSQTAWIQTGTIRENILFGAAMDAEKYRQTLHRSSLLKDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTATNLFNEYIMGGLAGKTVLLVTHQVDFLPAFDSVLLMSDGEIIEAAPYHHLLSSSHAFQELVNAHKETAGSDRLVDVTSSQKHSNSAREIKKTYMENHFEASKGDQLIKQEEREKGDQGFKPYIQYLNQNKGYIYFSVAALSHLTFVVGQILQNTWMADSVDNPRVSSLQLILVYLLIGVISTIFLLVRSLVAVALGLQSSKSLFFQLLNSLFRAPMAFYDSTPLGRILSRVSSDLSIVDLDVPFGFLFSVGATMNCYANLTVLAVVTWQVLFVSIPMIYFAIRLQRYYFASAKELMRMNGTTKSFVANHLAESVAGAVTIRAFDEEDRFFKKNLDLIDVNASPFFHSFAANEWLIQRLETVSAVVLASAALCMVVLPPGTFTSGFIGMALSYGLSLNNSLVFSIQNQCNIANNIISVERLNQYMHIPSEAPEVIEGNRPPVNWPVAGRVQINALQIRYRPDAPLVLRGITCTFEGRHKIGIVGRTGSGKSTLIGALFRLVEPAGGKIIVDGIDISSIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHSDQELWEVLGKCQLQEAVQEKEEGLDSSVVEAGANWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKSIRTEFADCTVITVAHRIPTVMDCTKVLAISDGKLVEYDEPMKLIKREGSLFGKLVKEYWSHFQSAESH 1480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02187 1480 CDD ABC_6TM_ABCC_D1 336 598 IPR044746 GO:0140359
Cca02g02187 1480 Gene3D - 623 855 IPR027417 -
Cca02g02187 1480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 619 848 IPR027417 -
Cca02g02187 1480 SMART AAA_5 1260 1452 IPR003593 -
Cca02g02187 1480 SMART AAA_5 652 825 IPR003593 -
Cca02g02187 1480 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 74 1480 - -
Cca02g02187 1480 SUPERFAMILY ABC transporter transmembrane region 918 1214 IPR036640 GO:0005524|GO:0016021
Cca02g02187 1480 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1236 1468 IPR003439 GO:0005524
Cca02g02187 1480 ProSitePatterns ABC transporters family signature. 750 764 IPR017871 GO:0005524
Cca02g02187 1480 CDD ABC_6TM_ABCC_D2 916 1209 IPR044726 GO:0140359
Cca02g02187 1480 Pfam ABC transporter 643 777 IPR003439 GO:0005524
Cca02g02187 1480 Gene3D - 1218 1469 IPR027417 -
Cca02g02187 1480 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 928 1197 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca02g02187 1480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1224 1461 IPR027417 -
Cca02g02187 1480 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 310 590 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca02g02187 1480 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 627 848 IPR003439 GO:0005524
Cca02g02187 1480 CDD ABCC_MRP_domain1 625 825 - -
Cca02g02187 1480 Pfam ABC transporter transmembrane region 310 575 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca02g02187 1480 Pfam ABC transporter transmembrane region 918 1160 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca02g02187 1480 Pfam ABC transporter 1251 1399 IPR003439 GO:0005524
Cca02g02187 1480 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 74 1480 - -
Cca02g02187 1480 Gene3D ABC transporter type 1, transmembrane domain 882 1215 IPR036640 GO:0005524|GO:0016021
Cca02g02187 1480 Gene3D ABC transporter type 1, transmembrane domain 281 607 IPR036640 GO:0005524|GO:0016021
Cca02g02187 1480 SUPERFAMILY ABC transporter transmembrane region 298 603 IPR036640 GO:0005524|GO:0016021
Cca02g02187 1480 CDD ABCC_MRP_domain2 1232 1452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02187 Cca-Chr2 42387159 42394233 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02187 619 872 Calmodulin-binding Proteins AT2G36910 29.670 5.71e-24 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02187 K05666 - gmx:100811468 2622.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02187 02 42387159 42394233 Cca08g00768 08 15005923 15013913 ECH
Cca02g02187 02 42387159 42394233 Cca02g02187 02 42387159 42394233 ECH
Cca08g00770 08 15100864 15111159 Cca02g02187 02 42387159 42394233 PCT