Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02183 ATGATGTACGGAACTTTGTGCAGCGATCGCAGAGGGTGGTGGCATCGAATGGCAGATCTTGTTAGCTACATGAATGCCGACCGTGACATCGACCAAgcattgattgctttgaaaaagggtgctcaactgcttaaatatggtcggaaaggaaagcctaagttttgtccctttagactttccaatGATGAACTGTCTTTAATCTGGATATCAAGTAGTGGTGAAAGAAATCTGAAGCTATCTTCTGTCTCAAGAATTATTCCAGGACAAAGAACTGCTGTCTTCCAACGATATCTGCGTCCTGAGAAGGACTATCTGTCTTTTTCACTTATTTATAACAACGGAAAGCGATCCCTTGATTTGATTTGCAAGGATAAAGTTGAGGCAGAAGTGTGGATTGCTGGTCTTAAGGTGCTGATATCTTCTGGTAAAGGTGGGCGTTCCAAAATTGATGGATGGAGTGACGGAGGCCTAGACCTTGATGACAGTAGAGACTTGACATCAAATAGTCCTAGTGAAAGTTCAGTTAGTGCTTCACGAGACAACAGTTCTCCTGACGTTTCTGTTAGTCTATCAAATACTTCTCCACAATCCATTTACTCTGAGAATACCTTAAATTTTGAAAGGTCACATGCACCATCAAACCCATCAAATATGCAAGTGAAAGGGTCTAGTTCAGATGTTTTTCGTGTTAGTGTTTCAAGTGCCCCCAGCACATCCAGTCATGGGTCTGCACCGGATGATTATGATGCTCTCGGGGATGTATACATCTGGGGGGAGGTTATCTGTGAGAATATTGTGAAAGTTGGTGCCGAGAAAAATGCTAGTTATTTTAGCCCTAGGACTGATATTCTCCTTCCTAGGCCACTTGAGTCAAATGTGGTTTTAGATGTGCTTCAAATAGCATGTGGTGTTAAACATGCTGCTTTAGTCACTAGGCAAGGTGAACTTTTTACATGGGGCGAAGAATCTGGAGGGCGCCTTGGTCATGGTGTTGGCAAGAATGTGATTCAACCTCGTTTGGTTGAAGCAATGACATCTACAACTGTTGATTTTGTTGCCTGTGGGGAGTTCCATACCTGTGCTGTTACAATGGCTGGGGAACTATATACATGGGGTGATGGTACTCATAATGCTGGGCTTCTTGGTCATGGCACTGATGTTAGTCATTGGATACCAAAGAGAATTGCTGGACCACTAGAGGGGCTTCAAGTTGCTTTAGTCACTTGTGGTCCATGGCACACCGCCTTGATAACTTCAACAGGGCAGCTCTTCACATTTGGTGATGGAACATTTGGTGTCCTCGGCCATGGAGATAGGGAAAATATTTCATATCCTAGAGAAGTAGAATCATTATCTGGGTTGAGGACAATAGCTGTTGCATGTGGAGTGTGGCATACTGCAGCTGTTGTAGAGGTTATTGTGACACAATCGAGTGCTAGTGTATCATCAGGTAAATTGTTTACTTGGGGTGATGGAGATAAAAATCGCCTTGGACATGGAGACAAGGATGCCCGTCTTGAACCAACTTGTGTACCTTCACTTATTGATTACAACTTTCATAGAATTGCTTGCGGGCACAGTTTGACAGTAGGCTTGACAACATCTGGACAAGTTTTTACAATGGGAAGCACTGTTTATGGTCAGCTTGGGAATCCCCAGTCTGATGGAAAGCTTCCGTGTTTGGTAGAAGACAAGCTTGCAGGAGAATCTGTTGATGAAATTGCATGTGGGGCTTATCATGTTACTGTTTTAACATCCAAAAATGAGGTTTACACTTGGGGGAAGGGTGCAAATGGGAGATTGGGTCATGGAGATGTTGAAGATCGAAAAACACCAACTTTGGTTGAAGCCTTGAAAGATAGACATGTGAAATATATTGCGTGTGGTTCAAACTACTCTGCGGCCATTTGCCTTCATAAGTGGGTATCTGGTGCTGAGCAGTCTCAGTGCTCAGCTTGTAGACAGGCATTTGGGTTCACTAGAAAGAGGCACAACTGTTATAATTGTGGACTTGTGCACTGCCACTCATGTAGTTCTAGGAAAGCATTAAGAGCTGCCCTGGCTCCTAATCCTGGGAAGCCATATCGTGTTTGTGATTCTTGTTTTGTAAAATTGAACAAGGTAGCAGAATTGGGTAATAATAATCGGAGGAATGCTCTGCCTCGTTTATCAGGTGAAAACAAGGACAGGTTAGATAAATCTGAGCTAAGATTGACCAAGACAGCAGTCCCTTCTAATATGGATTTGATAAAGCAGCTAGATAGTAAGGCAGCCAAACAGGGGAAGAAGGCTGATACATTCTCTCTGGTTCGCAACTCACAAGCACCGTCTATGTTACAACTCAAAGATGTTGTCTTGTCTACTGCTATTGACTTGAAGCGAGCAGCTCCAAGACCTGTCCTGACATCATCCGGAGTGAATTCCAGGTCCGTGTCCCCTTTCTCTAGAAGACCAAGTCCCCCTCGTTCAGCTACACCTATTCCGACAACATCGGGACTTTCCTTCTCAAAAAGTATTGCTGATAGTTTGAAGAAAACAAATGAACTTTTGAATCAGGAAGTGTCGAAGTTACGTGGTCAGGTTGAGACCCTGAGACAGAGGTGTGAACTCCAAGAATTAGAACTTCAAAGGTCTGCAAAAAAGACTCAGGAAGCTATGGCACTGGCTGCTGAGGAATCTGCCAAATCCAAGGCTGCAAAAGAAGTTATAAAGTCTCTTACAGCACAGCTCAAAGATCTTGCTGAGAGGCTTCCTCCCGGTGCTTATGATGCTGAGAACATCAGACCAGCTTACCTGCCAAATGGTCTGGAGTCAAATGGCATCCACTATCCAGAATTAAATGGCGAACGTCACACGAGGGCAGAATCAATCAGTGGCTCTAGTTTGGCTTCCATAGGACTTGAATCATCCCTGATGAATAGAACCGAGGGCACTTTGCCCGGAAGCTATGGGGCTCATCTTTACCAACAAAACCGGGGATATGTAACCTCTAATGGGACTGATGATTACCCTGATGTTAAATTGCCAAATGGAAGCGGCATGATTCAGGCAAGCAGCAGTACTGTATCAGATACTGTTGATGCTAGGGATTCTGGGAATTTCCAAGATGACGAAAATGGATCGAGATCAAGGAACGTGAATGCCGTAGTGCCTGCTAATAGTAATCAAATTGAGGCAGAATGGATTGAACAATATGAACCTGGCGTCTATATAACATTGGTTGCCCTGCGTGATGGAACAAGAGATCTGAAGCGAGTGCGGTTCAGCCGGCGAAGATTTGGAGAGCACCAAGCGGAGACTTGGTGGTCGGAGAACCGCGATAGAGTATACGAAAGATACAATGTTCGAAGCACCGACAAGTCTTCCAGCCAGACAGCTCGTAGGGCAGACGGTTCTGGTTCACCTGTTTTATAA 3414 0.4332 MMYGTLCSDRRGWWHRMADLVSYMNADRDIDQALIALKKGAQLLKYGRKGKPKFCPFRLSNDELSLIWISSSGERNLKLSSVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKVLISSGKGGRSKIDGWSDGGLDLDDSRDLTSNSPSESSVSASRDNSSPDVSVSLSNTSPQSIYSENTLNFERSHAPSNPSNMQVKGSSSDVFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVICENIVKVGAEKNASYFSPRTDILLPRPLESNVVLDVLQIACGVKHAALVTRQGELFTWGEESGGRLGHGVGKNVIQPRLVEAMTSTTVDFVACGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRIAGPLEGLQVALVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRENISYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKDARLEPTCVPSLIDYNFHRIACGHSLTVGLTTSGQVFTMGSTVYGQLGNPQSDGKLPCLVEDKLAGESVDEIACGAYHVTVLTSKNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCFVKLNKVAELGNNNRRNALPRLSGENKDRLDKSELRLTKTAVPSNMDLIKQLDSKAAKQGKKADTFSLVRNSQAPSMLQLKDVVLSTAIDLKRAAPRPVLTSSGVNSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSIADSLKKTNELLNQEVSKLRGQVETLRQRCELQELELQRSAKKTQEAMALAAEESAKSKAAKEVIKSLTAQLKDLAERLPPGAYDAENIRPAYLPNGLESNGIHYPELNGERHTRAESISGSSLASIGLESSLMNRTEGTLPGSYGAHLYQQNRGYVTSNGTDDYPDVKLPNGSGMIQASSSTVSDTVDARDSGNFQDDENGSRSRNVNAVVPANSNQIEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENRDRVYERYNVRSTDKSSSQTARRADGSGSPVL 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02183 1137 SUPERFAMILY PH domain-like 29 139 - -
Cca02g02183 1137 Coils Coil 840 881 - -
Cca02g02183 1137 MobiDBLite consensus disorder prediction 1117 1137 - -
Cca02g02183 1137 Gene3D - 477 644 IPR009091 -
Cca02g02183 1137 ProSiteProfiles BRX domain profile. 1059 1114 IPR013591 -
Cca02g02183 1137 MobiDBLite consensus disorder prediction 1012 1029 - -
Cca02g02183 1137 Pfam FYVE zinc finger 640 706 IPR000306 GO:0046872
Cca02g02183 1137 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 407 417 IPR000408 -
Cca02g02183 1137 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 314 365 IPR000408 -
Cca02g02183 1137 SMART fyve_4 638 707 IPR000306 GO:0046872
Cca02g02183 1137 CDD FYVE_like_SF 649 702 - -
Cca02g02183 1137 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 644 706 IPR017455 -
Cca02g02183 1137 Coils Coil 896 916 - -
Cca02g02183 1137 CDD PH_PLC_plant-like 28 140 - -
Cca02g02183 1137 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 29 1120 - -
Cca02g02183 1137 PRINTS Chromosome condensation regulator RCC1 signature 525 543 IPR000408 -
Cca02g02183 1137 PRINTS Chromosome condensation regulator RCC1 signature 423 437 IPR000408 -
Cca02g02183 1137 PRINTS Chromosome condensation regulator RCC1 signature 583 604 IPR000408 -
Cca02g02183 1137 PRINTS Chromosome condensation regulator RCC1 signature 297 310 IPR000408 -
Cca02g02183 1137 PRINTS Chromosome condensation regulator RCC1 signature 366 382 IPR000408 -
Cca02g02183 1137 PRINTS Chromosome condensation regulator RCC1 signature 407 423 IPR000408 -
Cca02g02183 1137 PRINTS Chromosome condensation regulator RCC1 signature 316 332 IPR000408 -
Cca02g02183 1137 Gene3D - 29 145 IPR011993 -
Cca02g02183 1137 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 536 587 IPR000408 -
Cca02g02183 1137 MobiDBLite consensus disorder prediction 162 196 - -
Cca02g02183 1137 Pfam Pleckstrin homology domain 34 139 IPR001849 -
Cca02g02183 1137 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 366 420 IPR000408 -
Cca02g02183 1137 MobiDBLite consensus disorder prediction 800 833 - -
Cca02g02183 1137 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 459 469 IPR000408 -
Cca02g02183 1137 MobiDBLite consensus disorder prediction 1009 1044 - -
Cca02g02183 1137 Pfam Transcription factor BRX N-terminal domain 891 926 IPR027988 -
Cca02g02183 1137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 645 715 IPR013083 -
Cca02g02183 1137 MobiDBLite consensus disorder prediction 801 818 - -
Cca02g02183 1137 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 421 472 IPR000408 -
Cca02g02183 1137 SUPERFAMILY RCC1/BLIP-II 251 641 IPR009091 -
Cca02g02183 1137 SUPERFAMILY FYVE/PHD zinc finger 640 711 IPR011011 -
Cca02g02183 1137 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 484 535 IPR000408 -
Cca02g02183 1137 Pfam Transcription factor regulating root and shoot growth via Pin3 1058 1113 IPR013591 -
Cca02g02183 1137 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 252 313 IPR000408 -
Cca02g02183 1137 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 300 310 IPR000408 -
Cca02g02183 1137 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 29 1120 - -
Cca02g02183 1137 Pfam Regulator of chromosome condensation (RCC1) repeat 366 417 IPR000408 -
Cca02g02183 1137 Pfam Regulator of chromosome condensation (RCC1) repeat 535 583 IPR000408 -
Cca02g02183 1137 Pfam Regulator of chromosome condensation (RCC1) repeat 589 636 IPR000408 -
Cca02g02183 1137 Pfam Regulator of chromosome condensation (RCC1) repeat 483 530 IPR000408 -
Cca02g02183 1137 Pfam Regulator of chromosome condensation (RCC1) repeat 314 362 IPR000408 -
Cca02g02183 1137 Pfam Regulator of chromosome condensation (RCC1) repeat 421 469 IPR000408 -
Cca02g02183 1137 Gene3D - 188 476 IPR009091 -
Cca02g02183 1137 MobiDBLite consensus disorder prediction 159 196 - -
Cca02g02183 1137 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 588 639 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02183 Cca-Chr2 42318223 42326415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02183 1060 1130 Major Intrinsic Protein MIP AT1G31880 49.296 4.78e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02183 - - gmx:100783270 2004.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00792 08 16476694 16488223 Cca02g02183 02 42318223 42326415 PCT