Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02173 ATGGCATCATCCAATCACTCATCATCCCTAAACCAAACCAAATTCGTCCATCCAAACAACGACCTTGAGCAACAAGAAACCCTAGAGGTTGAAACCAAGGACTTTGACTACTCAAAGCGATCTCAATGGCTCCGTGCTGCAGTCCTAGGAGCCAATGATGGTTTGGTCTCAACAGCATCCCTTATGATGGGTGTGGGAGCAGTGAAGCAAGACATCAAGGTCATGATCCTAACAGGTTTTGCAGGGCTAGTGGCTGGAGCATGCAGCATGGCCATAGGGGAGTTTGTGTCTGTGTACTCTCAGTTGGACATAGAAGTTGCTCAAATGAAaagagagaaggaaagggagaataatggacgacaaagagatgaagtggaagatgaggaagagaaagagAGCTTGCCAAACCCTATACATGCTGCAGCAGCTTCAGCTTTAGCATTTTCTGTTGGTGCAATGGTGCCTCTTCTTGCAGCATCTTTCATAAGGGAGTATAGGGTGAGGGTTGGTGTGGTTTTGGGAGCAGTGAGCTTTGCTCTTGTGGTGTTTGGTTGGTTGGGAGCAGTGTTGGGAAAGGCTCCAACATTGAGGTCTTGTGTGAGAGTCTTGGTTGGAGGTTGGCTAGCCATGGCTATAACTTTTGGGCTAACCAAGTTGATTGGATCAAGTGGTCTTTAG 678 0.4292 MASSNHSSSLNQTKFVHPNNDLEQQETLEVETKDFDYSKRSQWLRAAVLGANDGLVSTASLMMGVGAVKQDIKVMILTGFAGLVAGACSMAIGEFVSVYSQLDIEVAQMKREKERENNGRQRDEVEDEEEKESLPNPIHAAAASALAFSVGAMVPLLAASFIREYRVRVGVVLGAVSFALVVFGWLGAVLGKAPTLRSCVRVLVGGWLAMAITFGLTKLIGSSGL 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02173 225 PANTHER VACUOLAR IRON TRANSPORTER HOMOLOG 1-RELATED 6 222 - -
Cca02g02173 225 CDD Nodulin-21 42 194 - -
Cca02g02173 225 Pfam VIT family 44 125 IPR008217 GO:0005384|GO:0030026
Cca02g02173 225 Pfam VIT family 128 217 IPR008217 GO:0005384|GO:0030026
Cca02g02173 225 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 6 222 IPR008217 GO:0005384|GO:0030026
Cca02g02173 225 Coils Coil 99 131 - -
Cca02g02173 225 MobiDBLite consensus disorder prediction 110 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02173 Cca-Chr2 42118062 42119352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02173 19 225 Nodulin-like Gene Family AT3G43660 69.565 7.68e-102 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02173 K22736 - gmx:100814343 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00811 08 16961284 16962407 Cca02g02173 02 42118062 42119352 PCT