Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02172 ATGGGAAGGAAGAAGCCTTCGGCGAGGGACGACGAGAACGCCTCGCAGCCAGGCGCCGCCGGGAAATCGAAGAAGAAGGCGCTGCTCATCGACGACGACGAGTACGCCATCGGAACGGAGCTCTCTGAGGAGCCGGCGCCGGAGGAGAAGCCTGCTGGGAAGAAGAAAGGTAAAAAAGGTAatgctaaagctaagaataatgataacgatgatgatgatgatgatgatgttgaggttaatgatgacgaggatgtgcctgaggTTGTGTTTGCTGGGAAGAAGAAGGGGAAAAATAAGAAAGGTGGTGGGAGCAGTGGGTTCACTGCGTCTGGCTTTGGTTTGCTTGGTGATGAGGAAGGTGATGAAGAAGAGAAATCTGAGTTAATGGGTGAGGAGGATGAGGATGAGCCTGTGGTGAGTTTTTCGGGTAAGAAGAAGCCATCGAAGAAAAGTGGTGGCAGTGTGTTCAGTGCATCTGCTTTTGATGCTATTGATGATGGGGAGGCTGGTGAGGAGGAGGAGGATGAGCCAGTGGTTAGTTTTTCTGGCAAGAAGAAGTCTTCCAAGAGTTCGAAGAAAGGCAGTGGCGGTGGCAGTTTGTTCACTGCCtcggcttttgatgctattgatgatgatgaggatggtgaggttgtggatgataaggatgaggatgttgatgctgatgaGCCTGTTATTACTTTCACGGGGAAGAAGAAGTCTTCCAAAGGGAGTAAGAAGGGTGGGTCTGTGTTTTCAGCTGCGGTTCTCGGTGAGATtgatgatggagaggagaataaggatgaaaaggaggatggtgatgatgatgacgaCATTGGACCAATCACTTTCTCTGGTAAGAAAAAGAAGTCTTCAAGAAAGACTGTTAATTCGGCTAGCAAAGGTGTTTCAGTCGAGGATGATGAGTCTGGTAAAGGTGGTGATAACAAGGATGAGGATGACCTTTCTTTAGTTACGTTTTCTGGTAAAAAGAAGTCATCTAAGAAGAAAGGCAGTGGTGCTGCTGCCAAAGGGATTGATGAATTTGGGCTTGGGAGTGAAAATGTGGATGTAGTTGAGCCTGAGCAGCCCAGTGATGCTGGCAACACCAATGCAAATAAGAGTGAAGGGTTTGCTGAAACTTCTaaaaataagaagaagaataagaaaaagagtggaagaaCTGCTCAAGAGGAGGAGGATCTGGACAAACTTCTTGCAGAGCTTGGTGAGGCCCTTCCTGTGCCAAAACCCACAGCTGTTGCACCGCAGGATGATAAAGTTCAGCCCACTCCTGAAGTAGGTCCTGTTGCTGATGCCTCTGGGGAAAAGGAGGGTGAAGACGAGACTGTAGAGTCAGCTGCTGCAaagaagaagaagaagaagaaggaaaaggaaaaggagaagaaggcagctgcggccgcagcagcagcagcaggaagtgtgccagaaaaagaaacagcagAGGTTAAAGCTGAGATTATTGAATCAAAGAAGAATGAGTCAAAGACTAAAGCGGCTGATAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAGGCACTAGCTAGAAGAAAAGAGGCTGAAGAAAGGAAGAAAAGAGAAGAGGAGGAGAGGTTAAGGAAGGAGGAAGAGGAGCGACGAAAGCAAGAGGAACTTGAGAGACAGGCAGAGGAGGCTAGACGTAGAAAGAAGGAAAGAGAAAAGGAGAAACTCCAGAAGAAAAAGCAAGAAGGTAAACTGTTATCTGGAAAGCAGAAGGAAGAAGCCCGGCGTTTGGAGGCAATGAGGAGGCAGATTCTCAATAATACAGGGGGTATGACTCTCCCTTCTGGGGAGTCTGGTGCTCCGGCCAAAAAACCCATATATCAGACAAAGAAATTAAAACAAAATCAACGGAATCAGAATGGTGCTGCTGCTCAGACAGCTGAAAGTGTTGAAGCAAGGGAAGCTACCACTGATTTGGCCTCAGAGGAACCAGAAAAGATTGAAGAAGTGGAGTCAGTGCAAGTGGATGAGAAAGTTGAAGCTCCTGTAGCTGTTGAAGAGGCTGAAGCAGAAGATGATGAAGAGGATGAATGGGATGCAAAAAGCTGGGATGATGTTAATCTGAATGCCAAAGGCGCATTTGCTGATGAAGAGGCTGACTCAGAGCCTGTACCTATTGTCAAAAAGGAGATTAAAAATGCTTTACCTGCTCAGAATGCTGGTGCTTCTAATAAAACTGTTTCTAAGCCTGTGGATGAAGAAGGTGAAAATGGAAAGCAGGCTAAAGCAGTCACTATGAACAAAAATAACAACAGGGAACTACAAAAGTCTGCTGTGCCTCCTAAGCCTAATGATGAGAACCTCCGCTCCCCTATTTGCTGTATCATGGGGCATGTGGATACTGGCAAAACTAAGCTGCTGGACTGTATTCGAGGTACTAATGTTCAGGAGGGTGAGGCTGGTGGTATCACACAACAGATTGGTGCAACATACTTTACTGCTGAGAATATACGTGATAGAACAAAGGAACTGAAAGCTGATGCAAAGCTGAAAGTTCCTGGTCTACTGGTTATTGATACCCCAGGGCATGAGTCATTTACTAACTTGAGGTCTCGGGGTTCAGGTCTATGTGATATTGCAATTTTGGTTGTTGACATTATGCATGGGTTAGAGCAACAAACAATAGAATCACTAAATCTATTAAAGATGAGGAATACAGAATTCATTGTTGCCTTGAATAAGGTTGACAGGCTTTATGGGTGGAAAACATGTCGCAATTCTCCAATTGTTAAAGCAATTAAGCAGCAGACTAAGGATGTTCAAAATGAGTTTAATATGAGGCTCACTCAGATTATTACTCAATTCAAGGAACAGGGCCTGAATACTGAGTTGTATTATAAAAACAAAGAAATGGGAGAAACGTTCAGCATTGTGCCTACAAGTGCAATAAGTGGTGAAGGAATTCCTGATTTGTTATTACTATTGGTTCAATGGACCCAAAAAACAATGGTTGAGAAACTTACATACAGTGAAGAAGTGCAGTGTACTGTTTTAGAGGTGAAGGTAGTTGAAGGCCATGGAACTACTATTGATGTTGTTTTAGTTAATGGTGTTCTTCATGAAGGAGAACAAATAGTCGTCTGTGGAATGCAGGGGCCAATTGTTACCACAATTCGAGCTTTATTAACACCTCATCCAATGAAGGAACTTCGTGTCAAGGGAACATACCTTCATCACAAAGAAATCAAAGCTGCAATGGGTATAAAAATCACCGCTCAGGGGCTTGAACATGCCATTGCTGGCACTGGTTTATATGTGGTGAAGCCTGATGATGACTTGGAAGATGTTAAAGAATCAGCCATGGAGGATATGCGGTCAGTCATGAGCAGGATTGACAGGACTGGTGAAGGTGTTTGTGTACAGGCATCTACCCTTGGCTCCTTGGaagcattattggagtttttgaaaaccccggaagtgagcatccctgttagtggtataagcataggccctgtacataaaaaggatgtaatgaaggccagtgtaatgcttgaaaagaagcgagaatatgcagctatattggcatttgatgtcaaagttactcctgaggctagggaactggcagatgaattgggtgtgaagatattcattgctgatatcatttatcatctgttcgatcaatttaaagcttatattgacaacattaaggaggagaaaaagagagaagctgctgatgaggcagtcttcccatctgttatgaaaatcttaccaaattgcattttcaacaagaaggaCCCAATTGTTTTGGGAGTTGATATCCTCGAAGGCATCTTGAAGATTGGGACTCCAATATGTATTCCTTCCAGAGAGTTCATTGATATTGGTCGCATTGCGTCCATTGAAAATAACCATAAACCCGTTGATTATGCAAAGAAGGGGCAGAAAGTAGCCATTAAGATTATTGGCAGCAATCCTGAAGAGCAACAAAAAATGTTTGGGAGGCATTTTGAGATTGATGATGAACTTGTAAGCCATATTTCACGGAGATCTATTGATATACTCAAAACTAATTACCGGGATGATCTATCTATGGAGGAATGGAGGTTGGTTGTGAAATTGAAGAATCTTTTCAAGATACAATGA 4128 0.3689 MGRKKPSARDDENASQPGAAGKSKKKALLIDDDEYAIGTELSEEPAPEEKPAGKKKGKKGNAKAKNNDNDDDDDDDVEVNDDEDVPEVVFAGKKKGKNKKGGGSSGFTASGFGLLGDEEGDEEEKSELMGEEDEDEPVVSFSGKKKPSKKSGGSVFSASAFDAIDDGEAGEEEEDEPVVSFSGKKKSSKSSKKGSGGGSLFTASAFDAIDDDEDGEVVDDKDEDVDADEPVITFTGKKKSSKGSKKGGSVFSAAVLGEIDDGEENKDEKEDGDDDDDIGPITFSGKKKKSSRKTVNSASKGVSVEDDESGKGGDNKDEDDLSLVTFSGKKKSSKKKGSGAAAKGIDEFGLGSENVDVVEPEQPSDAGNTNANKSEGFAETSKNKKKNKKKSGRTAQEEEDLDKLLAELGEALPVPKPTAVAPQDDKVQPTPEVGPVADASGEKEGEDETVESAAAKKKKKKKEKEKEKKAAAAAAAAAGSVPEKETAEVKAEIIESKKNESKTKAADKKVPKHVREMQEALARRKEAEERKKREEEERLRKEEEERRKQEELERQAEEARRRKKEREKEKLQKKKQEGKLLSGKQKEEARRLEAMRRQILNNTGGMTLPSGESGAPAKKPIYQTKKLKQNQRNQNGAAAQTAESVEAREATTDLASEEPEKIEEVESVQVDEKVEAPVAVEEAEAEDDEEDEWDAKSWDDVNLNAKGAFADEEADSEPVPIVKKEIKNALPAQNAGASNKTVSKPVDEEGENGKQAKAVTMNKNNNRELQKSAVPPKPNDENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFTAENIRDRTKELKADAKLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEQQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNSPIVKAIKQQTKDVQNEFNMRLTQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTYSEEVQCTVLEVKVVEGHGTTIDVVLVNGVLHEGEQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAMGIKITAQGLEHAIAGTGLYVVKPDDDLEDVKESAMEDMRSVMSRIDRTGEGVCVQASTLGSLEALLEFLKTPEVSIPVSGISIGPVHKKDVMKASVMLEKKREYAAILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNIKEEKKREAADEAVFPSVMKILPNCIFNKKDPIVLGVDILEGILKIGTPICIPSREFIDIGRIASIENNHKPVDYAKKGQKVAIKIIGSNPEEQQKMFGRHFEIDDELVSHISRRSIDILKTNYRDDLSMEEWRLVVKLKNLFKIQ 1375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02172 1375 Gene3D - 777 1005 IPR027417 -
Cca02g02172 1375 MobiDBLite consensus disorder prediction 681 696 - -
Cca02g02172 1375 MobiDBLite consensus disorder prediction 761 780 - -
Cca02g02172 1375 Gene3D - 1127 1231 IPR036925 -
Cca02g02172 1375 MobiDBLite consensus disorder prediction 439 458 - -
Cca02g02172 1375 CDD aeIF5B_II 1007 1117 - -
Cca02g02172 1375 Pfam Translation-initiation factor 2 1111 1224 IPR023115 -
Cca02g02172 1375 MobiDBLite consensus disorder prediction 391 406 - -
Cca02g02172 1375 Coils Coil 450 475 - -
Cca02g02172 1375 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1108 1237 IPR036925 -
Cca02g02172 1375 PRINTS GTP-binding elongation factor signature 787 800 IPR000795 GO:0003924|GO:0005525
Cca02g02172 1375 PRINTS GTP-binding elongation factor signature 851 861 IPR000795 GO:0003924|GO:0005525
Cca02g02172 1375 PRINTS GTP-binding elongation factor signature 867 878 IPR000795 GO:0003924|GO:0005525
Cca02g02172 1375 PRINTS GTP-binding elongation factor signature 903 912 IPR000795 GO:0003924|GO:0005525
Cca02g02172 1375 CDD IF2_aeIF5B_IV 1246 1341 - -
Cca02g02172 1375 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1 1375 IPR015760 -
Cca02g02172 1375 PANTHER PHOTOSYSTEM II PROTEIN D1 1 1375 - -
Cca02g02172 1375 MobiDBLite consensus disorder prediction 116 136 - -
Cca02g02172 1375 Gene3D Translation factors 1238 1375 - -
Cca02g02172 1375 Pfam Elongation factor Tu GTP binding domain 787 995 IPR000795 GO:0003924|GO:0005525
Cca02g02172 1375 Coils Coil 510 581 - -
Cca02g02172 1375 MobiDBLite consensus disorder prediction 207 227 - -
Cca02g02172 1375 MobiDBLite consensus disorder prediction 730 755 - -
Cca02g02172 1375 MobiDBLite consensus disorder prediction 650 680 - -
Cca02g02172 1375 CDD IF2_eIF5B 786 996 - -
Cca02g02172 1375 Pfam Elongation factor Tu domain 2 1022 1097 IPR004161 GO:0005525
Cca02g02172 1375 TIGRFAM small_GTP: small GTP-binding protein domain 788 912 IPR005225 GO:0005525
Cca02g02172 1375 MobiDBLite consensus disorder prediction 363 377 - -
Cca02g02172 1375 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 783 1074 IPR027417 -
Cca02g02172 1375 MobiDBLite consensus disorder prediction 1 700 - -
Cca02g02172 1375 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 783 999 IPR000795 GO:0003924|GO:0005525
Cca02g02172 1375 MobiDBLite consensus disorder prediction 485 595 - -
Cca02g02172 1375 Gene3D Translation factors 1006 1126 - -
Cca02g02172 1375 MobiDBLite consensus disorder prediction 624 647 - -
Cca02g02172 1375 SUPERFAMILY Translation proteins 1242 1374 IPR009000 -
Cca02g02172 1375 MobiDBLite consensus disorder prediction 261 278 - -
Cca02g02172 1375 MobiDBLite consensus disorder prediction 69 85 - -
Cca02g02172 1375 MobiDBLite consensus disorder prediction 304 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02172 Cca-Chr2 42104538 42115697 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02172 228 1375 Eukaryotic Initiation Factors Gene Family AT1G76810 65.427 0.0 1209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02172 K03243 - gmx:100814875 1818.9