Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02168 ATGCTTGGGGACTCAGCTGTGTTGGGAGCGGGAGGAGGAGGTGGCGAAGCAGTGGCGGGGGCGGTGGGGAGTGGAGCGCATGAGGCGGGCAgcggaggcggtggcggtggcggtggcggtggcggAGCTGGATCAAATTCAGGGGACGAGGAAAGAGGTAGAATCGAAGAAGGTGAACGCAGCTTCGGTGGAAACCGGTGGCCACGACAAGAGACTTTGGCCTTGTTAAGGATACGGTCGGATATGGATGTCGCGTTTCGAGATGCAAGTGTTAAGGGTCCCTTGTGGGAAGAAGTATCCAGGAAAATGGCAGAGCTGGGGTATCACAGAAGTTCTAAGAAGTGCAAAGAGAAATTCGAGAACGTGTACAAGTACCACAAGAGAACCAAAGAAGGTCGAAGTGGGAAACAAGATGGTAAAACATATCGTTTCTTTGATCAATTAGAAGCCCTTGAGAACCACACTCCAACACCCCATTCCCCCAACCcatcaccaaagccaccccaagtatcatcaagagtagcaatagcaccaacggcaacagcatcagtgtcactaccaattgcagcagcgacaacaacagtggcaatgcagccagtagtactgtccaacacggcactcactagtgtccccaacatcactgttccatcaacaacaccaCTCCCTATAAGTATAACCATTCCTCAACCCATTGTCAACACCCCACCAACAAACCTCACCATCCCTTCATACCCTCCAACAAACCCTACCAATTTCCCACCACCAAACcctacctcttaccccaccgacaccttctccaactctacctcctcctccacctcctccGACGAAACACTCgaagggaggcgcaagaggaagcgcaagtggaagGACTTCTTCGAGAGACTAATGAAGGAAGTGATCGAGAAGCAAGAGGACCTGCAGAAGCGCTTCTTGGAAGCCATAGAGAAACGCGAGCACGACAGAATCGCAAGAGAAGAAGCATGGAGAGTACAAGAGATGCAAAGAATCAACCGAGAAAGAGAAATCCTCGCACAAGAAAGATCCATAGCCGCAGCCAAAGACGCTGCCGTTATGTCATTCCTTCAGAAAATAGCCGAACAACAAAACCTCGGTCAAACGTTGAGcaacatcaacattgtacaaccacaaccacaaccatcacaacaacaacaacaacctcaacCTAGTGTAGCACCGGCACCAGTGAATGTTACACAGCCCGTGGTGCTACCGGTGGTTCCACAATCGCAACCACAACAACAAGTGATGACGAATATGGAGATAGTGAAAGTTGATAGGAACAATAATGGGGAGAATTCGGTGGCATCGAGTTCTTCGAGATGGCCAAAACTAGAGGTTCAGGCGTTGATAAAGCTTCGAACGAACATGGATGCCAAGTATCAAGAGAATGGACCAAAGGGTCCTCTCTGGGAGGAGATCTCAGCCTCCATGAGGAAGCTCGGGTACAACCGAAACGCGAAGAGGTGCAAAGAGAAATGGGAGAACATCAACAAATACTTCAAGAAAGTGAAAGAGAGCAACAAGAGGAGACCGGAAGATTCCAAAACGTGCCCTTACTTCCACCAGCTGGACGCGCTGTACAGGGAGAAGAGCAAGGCGGAGAGCGCGGCGGAGAAGGCGGAGAGCGCGGTGGCGCCGCTAATGGTGCGGCCGGAGCAGCAGTGGCCACCTCAGCAGGATAGGGACGTGGCAATggaggacgcggagaacgacgatgatgagtacgaaggagaagaggaggaagatgatgaagaggacgaagaaggtggtggtggtggCAAGTATGAGATAGTGGCGAACAAAGCAAGTGGTGGTTCAGGTGAGTAG 1851 0.3868 MLGDSAVLGAGGGGGEAVAGAVGSGAHEAGSGGGGGGGGGGGAGSNSGDEERGRIEEGERSFGGNRWPRQETLALLRIRSDMDVAFRDASVKGPLWEEVSRKMAELGYHRSSKKCKEKFENVYKYHKRTKEGRSGKQDGKTYRFFDQLEALENHTPTPHSPNPSPKPPQVSSRVAIAPTATASVSLPIAAATTTVAMQPVVLSNTALTSVPNITVPSTTPLPISITIPQPIVNTPPTNLTIPSYPPTNPTNFPPPNPTSYPTDTFSNSTSSSTSSDETLEGRRKRKRKWKDFFERLMKEVIEKQEDLQKRFLEAIEKREHDRIAREEAWRVQEMQRINREREILAQERSIAAAKDAAVMSFLQKIAEQQNLGQTLSNINIVQPQPQPSQQQQQPQPSVAPAPVNVTQPVVLPVVPQSQPQQQVMTNMEIVKVDRNNNGENSVASSSSRWPKLEVQALIKLRTNMDAKYQENGPKGPLWEEISASMRKLGYNRNAKRCKEKWENINKYFKKVKESNKRRPEDSKTCPYFHQLDALYREKSKAESAAEKAESAVAPLMVRPEQQWPPQQDRDVAMEDAENDDDEYEGEEEEDDEEDEEGGGGGKYEIVANKASGGSGE 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02168 616 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 608 - -
Cca02g02168 616 Coils Coil 290 317 - -
Cca02g02168 616 MobiDBLite consensus disorder prediction 383 402 - -
Cca02g02168 616 MobiDBLite consensus disorder prediction 1 69 - -
Cca02g02168 616 CDD GT1 447 512 - -
Cca02g02168 616 CDD GT1 65 130 - -
Cca02g02168 616 ProSiteProfiles Myb-like domain profile. 65 123 IPR001005 -
Cca02g02168 616 Coils Coil 573 593 - -
Cca02g02168 616 MobiDBLite consensus disorder prediction 49 64 - -
Cca02g02168 616 MobiDBLite consensus disorder prediction 236 285 - -
Cca02g02168 616 PANTHER - 1 608 - -
Cca02g02168 616 MobiDBLite consensus disorder prediction 239 260 - -
Cca02g02168 616 MobiDBLite consensus disorder prediction 153 173 - -
Cca02g02168 616 MobiDBLite consensus disorder prediction 261 276 - -
Cca02g02168 616 ProSiteProfiles Myb-like domain profile. 447 505 IPR001005 -
Cca02g02168 616 MobiDBLite consensus disorder prediction 539 616 - -
Cca02g02168 616 Coils Coil 531 551 - -
Cca02g02168 616 Gene3D - 67 128 - -
Cca02g02168 616 Gene3D - 449 510 - -
Cca02g02168 616 SMART sant 63 125 IPR001005 -
Cca02g02168 616 SMART sant 445 507 IPR001005 -
Cca02g02168 616 MobiDBLite consensus disorder prediction 573 598 - -
Cca02g02168 616 Pfam Myb/SANT-like DNA-binding domain 447 534 IPR044822 -
Cca02g02168 616 Pfam Myb/SANT-like DNA-binding domain 65 151 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02168 Cca-Chr2 42045902 42048868 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02168 56 563 Trihelix Transcription Factor Family AT1G76880 51.992 8.74e-160 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Cca02g02168 Myb_DNA-bind_4 1.9e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02168 - - gsj:114402550 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00827 08 17568346 17571800 Cca02g02168 02 42045902 42048868 PCT