Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02167 ATGCAGCTCGGAGACACCACAGTGTTGGAAACCTCCTCCGGGGAGGCCGTGGCGGCGCTTGACGGCGGAGAGGTCATCATGGTGGACGCAAATTCCGGCGAGGAGAAGATAAAGGAGGGTGCCGGAGAAGAAGAAGGTGACAAGATCACTAACTCTTGCGGGGGAAACAGATGGCCACGCCAAGAAACTTTGGCTCTCTTGAAGATAAGGTCCGATATGGATGCTGTGTTTCGAGATTCAAGTCTTAAGGGTCCACTTTGGGAACAAGTTGCAAGGAAACTAGCGGAACTGGGTTATCACCGAAGCGCAAAGAAGTGCAAGGAGAAATTTGAGAATGTGTACAAGTACCACAAAAGAACCAAAGAGAGCAGAAGTGGCAAACATGAAGGAAAAACCTATAAATTCTTTGATCAATTACAAGCCCTTGAGAACCAATTCCCACTCTCTTACCCGCCAAAACCACTACCCACTTTGGCAACAACAACAAACACAGTGGCATTATTGCCACCTCCAACAACAAGGCCTAGTGACACAACACCAATCTCTTATGTCACCACCACTGTTCCCTCCACAAACCCTACAGTCATatctccttcgccaccaccaccaaccaatgccgccgccaccaccaccaccatcaccGTCACTTCTCCAACAGTAGCAACCAACCCTAGAAACCCTCCGGAACCcaacaacaatgagaataacaataacaataacaTCCCTTTCTCTTTGCCCAACATGAACAACCTCTTCTCAACCACTTCAACCTCTTCCTCCACGGCCTCGGATGAGGACTTGGAAGAGAAGTACCGGAAGAAGAGAAAGTGGAAGGACTACTTCAGGAGGCTCACGAGGCAAGTCTTGGTCAAGCAAGAGGAAATGCAAAAGAGGTTCCTCGAAGCCATAGACAAAAGGGAGAGAGAACACGTGGCACAACAAGAGGCTTGGAGGATCCAAGAAATGGCAAGGATCAATAGAGAACATGAACTTCTTGTTCAAGAAAGATCAACTGCGGCAGCCAAAAATGCAGCAGTTATTGCTTTTTTGCAACAGTTATCTGGTCAGCACCAAAATCCCACAACACAAGCCGTTGCCAATTTCTTCCAacaaccaccaccacagccaccaccaccaccaccacaagctccacaaccacaaacacaaGTAATGATGTCTAATAATAACAACAACATTGAAATTCAGAAACTGAATAATGGTCACAGTGCGGTTGctcctactgctattattgctgctactgcgactggtactCCATTGAGTTCTTTATCTTCTTCAAGGTGGCCAAAGACAGAAGTTCATGCTTTGATAAGGTTGAGGACGAGTCTTGAACCTAAGTACCAAGAAAATGGACCAAAGGCTCCATTGTGGGAGGATATATCCGCGGGAATGTCGAGGCTCGGATACAACAGGAGTGCCAAAAGATGCAAGGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAGGTGAAGGAAAGCAACAAGCAAAGGCGTGAGGATAGTAAGACATGTCCCTATTTTCATGAACTCGATGCCCTATACAGAGAAAAGAGCAAAACTCAGAATCCCTTTGGCGCTTCATTCCACAACATGAAGGCACATGAGATGATGGAGCCACTGATGGTGCAACCGGAGCAGCAATGGAGACCTCCCTCTGAATATGAACAAGGTGCAGCGAAGGAGAGCAatgaagggcaatatgaaagaagagatagagaagaagaagatgaagaagaagaagaacaagaagaattagaggatgataacgaagagggagatctagagagtgtggaagatgaagGGGATAGCCGTTATGAGATTGCGACAAATAAACTTTCTTCAGTGGACACCGTTGAATGA 1878 0.3924 MQLGDTTVLETSSGEAVAALDGGEVIMVDANSGEEKIKEGAGEEEGDKITNSCGGNRWPRQETLALLKIRSDMDAVFRDSSLKGPLWEQVARKLAELGYHRSAKKCKEKFENVYKYHKRTKESRSGKHEGKTYKFFDQLQALENQFPLSYPPKPLPTLATTTNTVALLPPPTTRPSDTTPISYVTTTVPSTNPTVISPSPPPPTNAAATTTTITVTSPTVATNPRNPPEPNNNENNNNNNIPFSLPNMNNLFSTTSTSSSTASDEDLEEKYRKKRKWKDYFRRLTRQVLVKQEEMQKRFLEAIDKREREHVAQQEAWRIQEMARINREHELLVQERSTAAAKNAAVIAFLQQLSGQHQNPTTQAVANFFQQPPPQPPPPPPQAPQPQTQVMMSNNNNNIEIQKLNNGHSAVAPTAIIAATATGTPLSSLSSSRWPKTEVHALIRLRTSLEPKYQENGPKAPLWEDISAGMSRLGYNRSAKRCKEKWENINKYFKKVKESNKQRREDSKTCPYFHELDALYREKSKTQNPFGASFHNMKAHEMMEPLMVQPEQQWRPPSEYEQGAAKESNEGQYERRDREEEDEEEEEQEELEDDNEEGDLESVEDEGDSRYEIATNKLSSVDTVE 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02167 625 MobiDBLite consensus disorder prediction 206 262 - -
Cca02g02167 625 CDD GT1 56 121 - -
Cca02g02167 625 Pfam Myb/SANT-like DNA-binding domain 56 142 IPR044822 -
Cca02g02167 625 Pfam Myb/SANT-like DNA-binding domain 432 519 IPR044822 -
Cca02g02167 625 MobiDBLite consensus disorder prediction 370 386 - -
Cca02g02167 625 ProSiteProfiles Myb-like domain profile. 426 490 IPR001005 -
Cca02g02167 625 MobiDBLite consensus disorder prediction 577 606 - -
Cca02g02167 625 SMART sant 54 116 IPR001005 -
Cca02g02167 625 SMART sant 430 492 IPR001005 -
Cca02g02167 625 MobiDBLite consensus disorder prediction 367 390 - -
Cca02g02167 625 MobiDBLite consensus disorder prediction 551 625 - -
Cca02g02167 625 CDD GT1 432 497 - -
Cca02g02167 625 Gene3D - 58 119 - -
Cca02g02167 625 Gene3D - 434 495 - -
Cca02g02167 625 MobiDBLite consensus disorder prediction 34 55 - -
Cca02g02167 625 PANTHER - 4 615 - -
Cca02g02167 625 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 4 615 - -
Cca02g02167 625 Coils Coil 569 601 - -
Cca02g02167 625 MobiDBLite consensus disorder prediction 187 269 - -
Cca02g02167 625 ProSiteProfiles Myb-like domain profile. 56 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02167 Cca-Chr2 42013867 42017380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02167 39 553 Trihelix Transcription Factor Family AT1G76890 48.218 1.33e-139 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Cca02g02167 Myb_DNA-bind_4 4e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02167 - - gsj:114370603 816.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00828 08 17643150 17646642 Cca02g02167 02 42013867 42017380 PCT