Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02166 ATGTCCTTCCGCAGCATAGTTCGTGATGTAAGGGATGGATTTGGAAGCCTATCAAGGAGGAGTTTTGACGCAAGGCTTCCTGGCCATAACAGAGGCAAGTCACGCAGTTCTGTCCACGAGTTGCAGGACCAGCCACCGGTTATACAGAACAGCCGGTGGGCTAGCCTTCCGCCAGAGCTTCTTCGTGATGTTATTAAGAGATTGGAAGCAAGTGAGAGTACTTGGCCTGGTCGCAAGCATGTGATTGCGTGTGCGGCTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTCAGCAGTCCTGAATTCTGTGGGAAAATTACTTTCCCTGTTTCCCTGAAGCAGCCTGGGCATAGGGATGGAACTATCCAGTGTTTCATCAAGAGAGACAAATCGAAGCTAACATACCACCTCTTCCTTTGTCTTAGTCCTGCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAAAGGACAAGAAGAACAACTTGCACGGAGTATATTATATCAATGGATGCAGATAACATATCGAGATCTAGTAGTACATACATTGGAAAACTGAGGTCAAATTTTCTTGGCACCAAGTTTATAATTTATGACACTCAACCTCCCTACAACAATGCTATGCTGCCTCCACCTGGGCGCAGCAGTAGGTTTTCTTCAAAAAAGGTTTCTCCAAAGGTTCCTAGCGGCAGCTACAATATTGCCCAGGTCACCTATGAGTTGAATGTCCTCGGTACTAGGGGCCCACGGAGGATGAATTGCACAATGTACTCAATTCCTGCTTCAGCCCTTGAGCCTGGTGGTGCTGTCCCTGGCCAGCCGGAACTCCTTCCCCGTGCCCTTGAGGATTCTTTTCGGAGTATATCCTTCTCGAGATCAATTGACACTTCAACCGAGTTTAGCAGTGCCAGGTTCTCCGACATAATGGGAACTGGCAATGAAGAGGAAGAGGGAAAGGCAAGACCTCTAGTTCTAAAGAACAAGTCTCCAAGGTGGCATGAACAGCTGCAATGTTGGTGCCTCAACTTTAGAGGAAGGGTCACTGTTGCCTCTGTCAAGAATTTTCAGCTGATTGCGGCCACACCGCCAGCACCAGTAGCCAGTGCTCCTACAGGCACAGGGCCTACACCATCTCAGCCAACGCAGTCTTCTGACCATGACAAGATTATTCTTCAGTTTGGCAAGGTTGGCAAGGATATGTTTACAATGGATTATCGATACCCCCTCTCTGCATTTCAGGCTTTTGCCATATGCTTGACTAGCTTTGACACAAAACTGGCTTGTGAATAG 1299 0.475 MSFRSIVRDVRDGFGSLSRRSFDARLPGHNRGKSRSSVHELQDQPPVIQNSRWASLPPELLRDVIKRLEASESTWPGRKHVIACAAVCKSWREMCKEIVSSPEFCGKITFPVSLKQPGHRDGTIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAMLPPPGRSSRFSSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMYSIPASALEPGGAVPGQPELLPRALEDSFRSISFSRSIDTSTEFSSARFSDIMGTGNEEEEGKARPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATPPAPVASAPTGTGPTPSQPTQSSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02166 432 Gene3D - 48 101 - -
Cca02g02166 432 Gene3D Tubby Protein; Chain A 110 432 IPR025659 -
Cca02g02166 432 ProSitePatterns Tub family signature 2. 417 432 IPR018066 -
Cca02g02166 432 MobiDBLite consensus disorder prediction 374 388 - -
Cca02g02166 432 Pfam F-box domain 53 100 IPR001810 GO:0005515
Cca02g02166 432 Pfam Tub family 114 427 IPR000007 -
Cca02g02166 432 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Cca02g02166 432 MobiDBLite consensus disorder prediction 366 388 - -
Cca02g02166 432 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 432 - -
Cca02g02166 432 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Cca02g02166 432 PANTHER TUBBY-RELATED 1 432 - -
Cca02g02166 432 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Cca02g02166 432 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Cca02g02166 432 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Cca02g02166 432 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Cca02g02166 432 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Cca02g02166 432 PRINTS Tubby superfamily signature 389 408 IPR000007 -
Cca02g02166 432 PRINTS Tubby superfamily signature 410 432 IPR000007 -
Cca02g02166 432 SUPERFAMILY Tubby C-terminal domain-like 102 432 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02166 Cca-Chr2 41988442 41992771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02166 1 432 TUB Transcription Factor Family AT1G76900 69.499 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Cca02g02166 Tub 1.3e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02166 K19600 - gmx:100817532 769.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00831 08 17940488 17945841 Cca02g02166 02 41988442 41992771 PCT