Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02151 ATGCGATACGCGTTTTCAACTATGATTGTTTCTGTTCGGGTCTTCACTCGCCGCAGCAGGAGCAGCGTCAGCAGGAGAAGGATGTCTCACAGGAAGTTCGAACACCCACGACACGGTTCTCTGGGATTCCTCCCCAGGAAGCGTGCGGCTCGTCACAGGGGAAAAGTGAAGGCTTTCCCCAAGGATGACCCAAGCAAGGCACCCAAGCTCACTGCATTCTTGGGTTATAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGGTCAAAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGTTATGTGAAAACTCCCCGTGGCCTTCGAACATTGAACACTGTATGGGCTCAGCATTTGAGTGAGGAAGTGAAACGTAGGTTCTATAAGAACTGGTGCAAGTCCAAGAAGAAGGCTTTCACCAAGTACTCAAAGCAGTATGAATCTGAGGAAGGAAAAAAAAACGTTGAGGCCCAGCTGGAGAAACTCAAGAAGTATGCTACTGTGGTCCGTGTTTTGGCTCACACTCAGATCAGGAAAATGAAAGGTTTGAAGCAAAAGAAAGCCCATCTCATGGAAATTCAGGTTAATGGTGGGACTATTGCACAGAAGGTGGACTTTGCGTACAGTTTCTTTGAGAAGCAGGTTCCTGTTGATGCTGTTTTCCAGAAGGATGAGATGATTGACATCATCGGAGTGACAAAGGGTAAGGGTTATGAAGGTGTTGTAACTCGTTGGGGTGTTACACGCCTTCCCCGTAAGACTCACAGGGGTTTGAGGAAGGTGGCATGTATTGGTGCCTGGCATCCTGCTAGAGTTTCCTTCACTGTTGCCAGGGCTGGTCAGAATGGTTATCACCACCGAACTGAGTTGAACAAGAAGGTTTACAAGCTCGGCAAAGCTGGAGATGAGTCTCACACTGCTCTGACAGAGTTTGACAGGACTGAGAAAGACATTACGCCAATGGGTGGTTTCCCACACTATGGTATTGTGAACCATGATTATATCATGGTCAAGGGATGCTGTGTTGGTCCCAAGAAGAGGGTGATCACTTTGCGCCAATCGCTTCTTAAGCAGACTTCTCGTGTTGCTCTGGAGGAGATCAAACTCAAGTTTATCGACACCTCTTCAAAGTTTGGGCATGGACGTTTCCAGACAACGCAGGAGAAGCAGAAGTTCTTTGGACGCCTCAAAGCATAA 1251 0.4764 MRYAFSTMIVSVRVFTRRSRSSVSRRRMSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKAPKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGLRTLNTVWAQHLSEEVKRRFYKNWCKSKKKAFTKYSKQYESEEGKKNVEAQLEKLKKYATVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAQKVDFAYSFFEKQVPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKVYKLGKAGDESHTALTEFDRTEKDITPMGGFPHYGIVNHDYIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFFGRLKA 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02151 416 Gene3D Translation factors 71 412 - -
Cca02g02151 416 SUPERFAMILY Translation proteins 31 397 IPR009000 -
Cca02g02151 416 Gene3D - 110 234 - -
Cca02g02151 416 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 28 416 IPR045077 GO:0003735|GO:0005840|GO:0006412
Cca02g02151 416 Gene3D Ribosomal protein L3, domain 3 28 301 IPR044892 -
Cca02g02151 416 Pfam Ribosomal protein L3 28 397 IPR000597 GO:0003735|GO:0005840|GO:0006412
Cca02g02151 416 PANTHER 60S RIBOSOMAL PROTEIN L3-LIKE 28 416 - -
Cca02g02151 416 ProSitePatterns Ribosomal protein L3 signature. 239 262 IPR019926 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02151 Cca-Chr2 41754813 41758822 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02151 28 414 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 86.305 0.0 699