Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02151 ATGCGATACGCGTTTTCAACTATGATTGTTTCTGTTCGGGTCTTCACTCGCCGCAGCAGGAGCAGCGTCAGCAGGAGAAGGATGTCTCACAGGAAGTTCGAACACCCACGACACGGTTCTCTGGGATTCCTCCCCAGGAAGCGTGCGGCTCGTCACAGGGGAAAAGTGAAGGCTTTCCCCAAGGATGACCCAAGCAAGGCACCCAAGCTCACTGCATTCTTGGGTTATAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGGTCAAAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGTTATGTGAAAACTCCCCGTGGCCTTCGAACATTGAACACTGTATGGGCTCAGCATTTGAGTGAGGAAGTGAAACGTAGGTTCTATAAGAACTGGTGCAAGTCCAAGAAGAAGGCTTTCACCAAGTACTCAAAGCAGTATGAATCTGAGGAAGGAAAAAAAAACGTTGAGGCCCAGCTGGAGAAACTCAAGAAGTATGCTACTGTGGTCCGTGTTTTGGCTCACACTCAGATCAGGAAAATGAAAGGTTTGAAGCAAAAGAAAGCCCATCTCATGGAAATTCAGGTTAATGGTGGGACTATTGCACAGAAGGTGGACTTTGCGTACAGTTTCTTTGAGAAGCAGGTTCCTGTTGATGCTGTTTTCCAGAAGGATGAGATGATTGACATCATCGGAGTGACAAAGGGTAAGGGTTATGAAGGTGTTGTAACTCGTTGGGGTGTTACACGCCTTCCCCGTAAGACTCACAGGGGTTTGAGGAAGGTGGCATGTATTGGTGCCTGGCATCCTGCTAGAGTTTCCTTCACTGTTGCCAGGGCTGGTCAGAATGGTTATCACCACCGAACTGAGTTGAACAAGAAGGTTTACAAGCTCGGCAAAGCTGGAGATGAGTCTCACACTGCTCTGACAGAGTTTGACAGGACTGAGAAAGACATTACGCCAATGGGTGGTTTCCCACACTATGGTATTGTGAACCATGATTATATCATGGTCAAGGGATGCTGTGTTGGTCCCAAGAAGAGGGTGATCACTTTGCGCCAATCGCTTCTTAAGCAGACTTCTCGTGTTGCTCTGGAGGAGATCAAACTCAAGTTTATCGACACCTCTTCAAAGTTTGGGCATGGACGTTTCCAGACAACGCAGGAGAAGCAGAAGTTCTTTGGACGCCTCAAAGCATAA 1251 0.4764 MRYAFSTMIVSVRVFTRRSRSSVSRRRMSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKAPKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGLRTLNTVWAQHLSEEVKRRFYKNWCKSKKKAFTKYSKQYESEEGKKNVEAQLEKLKKYATVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAQKVDFAYSFFEKQVPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKVYKLGKAGDESHTALTEFDRTEKDITPMGGFPHYGIVNHDYIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFFGRLKA 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02151 416 Gene3D Translation factors 71 412 - -
Cca02g02151 416 SUPERFAMILY Translation proteins 31 397 IPR009000 -
Cca02g02151 416 Gene3D - 110 234 - -
Cca02g02151 416 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 28 416 IPR045077 GO:0003735|GO:0005840|GO:0006412
Cca02g02151 416 Gene3D Ribosomal protein L3, domain 3 28 301 IPR044892 -
Cca02g02151 416 Pfam Ribosomal protein L3 28 397 IPR000597 GO:0003735|GO:0005840|GO:0006412
Cca02g02151 416 PANTHER 60S RIBOSOMAL PROTEIN L3-LIKE 28 416 - -
Cca02g02151 416 ProSitePatterns Ribosomal protein L3 signature. 239 262 IPR019926 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02151 Cca-Chr2 41754813 41758822 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02151 28 414 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 86.305 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02151 K02925 K10999 gmx:100806786 780.4