Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02144 ATGCGAGACCCGGAGCTGGCAAGTGTTCATCTCACTCTCATTCACCTTCCACTGAATGAGAGAGAGAGAGGGTCAAAAATTGTGGGCTCACACAGGAATGTGATGGAAAAGCTTCACATAAAAGAAAAAGAAGAGAGAGAGAGAGGGAAAAGGGAAGTGATTGTGATCCCAGAGATGGCGCCGGAAAAATTCCCCGCCAGTGCCGACAGATGTCTTCTCTTTCCACCGGGAGCCGCTAACTGCATTCGAATTTCGTTGATCATTGCGCTTTTTTTTTTGGCGGCACAGGTTACCAATACCACCATTGCTCAGATGGATCTTCATACTGAAGAGTTGCCTCAATACATACATATAAATCAGAATGAATTTTTCATGAGAAGGCATAAGAAGCAGAAGGAGGAGGATATTGCTATATGTGAATGCAGATTTGATGCTGATGACCCTGACAGTGCATGTGGGGATAGCTGCCTGAATGTATTAACCAGCACTGAATGCACCCCTGGTCATTGCCCTTGTGATATCTTATGCAAAAATCAGAAATTTCAGAAGTGTGAATATGCAAAAACAAAGTTGTTCAAAACTGAAGGCCGTGGGTGGGGTCTGTTGGCTGATGAGGACATTAAGGCAGGACAATTTGTCATTGAATACTGTGGGGAAGTGATATCATGGAAAGAAGCGAAACGGAGATCCCAGACTTATGAAATCCAAGGTCTTAAAGATGCATTTATCATTTGCCTTAATGCATCCGAATCTATTGATGCAACCAGAAAAGGAAGCCTTGCTAGATTTATAAATCATTCCTGTCAACCGAATTGTGAGACAAGAAAATGGAATGTGTTGGGGGAAATAAGAGTCGGAATATTTGCAAAACATGATATTCCTATTGGAACTGAATTGGCTTATGATTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTCGCTGCCTCTGTGGTGCACTTAAGTGTTCTGGATTCCTTGGAGCAAAATCTCGTGGTTTTCAGGAGGATACTTATCTATGGGAAGATGACGATGACAGGTACTCTGTCGAAAAAATTCCTGTATATGATTCTGCAGAGGATGAACTGGAGTCAAATGTTAATGGACGAACTGAACACTCTTTGGATGTTACAGTTAAAGCTGAGCAACTATCGGAGTCCACTGCTTTCCATGTTCAGCCACTTGATTCAGTTCAAATGAAAGGTTTGGATGTCAAGAAGATTAAAACTGATGTTGAAGGGGAGGATATGAACTTGTACTCGAATGGTACAGAACAGACCCTTTCACAAAAGAATGCAATGATATCACGAATTCGAGATAATGCTGCGGGCAGAAACTATCGCCTTGGACCTAGGTCCATGTCTACCAAAAGATCAAGGGCATACAACGGTGGAAGGTTTAAAAATCTCATAGAGAAGAAAGTTGATGCAAAGTTTGCAGCTGGCCTCTTAGCATCCAAGGAAGCACAAGGGGAGATTTTAAATTGTGAG 1488 0.4207 MRDPELASVHLTLIHLPLNERERGSKIVGSHRNVMEKLHIKEKEERERGKREVIVIPEMAPEKFPASADRCLLFPPGAANCIRISLIIALFFLAAQVTNTTIAQMDLHTEELPQYIHINQNEFFMRRHKKQKEEDIAICECRFDADDPDSACGDSCLNVLTSTECTPGHCPCDILCKNQKFQKCEYAKTKLFKTEGRGWGLLADEDIKAGQFVIEYCGEVISWKEAKRRSQTYEIQGLKDAFIICLNASESIDATRKGSLARFINHSCQPNCETRKWNVLGEIRVGIFAKHDIPIGTELAYDYNFEWFGGAKVRCLCGALKCSGFLGAKSRGFQEDTYLWEDDDDRYSVEKIPVYDSAEDELESNVNGRTEHSLDVTVKAEQLSESTAFHVQPLDSVQMKGLDVKKIKTDVEGEDMNLYSNGTEQTLSQKNAMISRIRDNAAGRNYRLGPRSMSTKRSRAYNGGRFKNLIEKKVDAKFAAGLLASKEAQGEILNCE 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02144 496 PANTHER SET DOMAIN PROTEINS 107 496 - -
Cca02g02144 496 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 107 496 - -
Cca02g02144 496 ProSiteProfiles AWS domain profile. 134 185 IPR006560 GO:0005634|GO:0018024
Cca02g02144 496 ProSiteProfiles Post-SET domain profile. 311 327 IPR003616 -
Cca02g02144 496 SUPERFAMILY SET domain 113 324 IPR046341 -
Cca02g02144 496 Pfam AWS domain 146 184 IPR006560 GO:0005634|GO:0018024
Cca02g02144 496 ProSiteProfiles SET domain profile. 187 304 IPR001214 GO:0005515
Cca02g02144 496 Pfam SET domain 198 304 IPR001214 GO:0005515
Cca02g02144 496 SMART shorttest3 134 186 IPR006560 GO:0005634|GO:0018024
Cca02g02144 496 SMART set_7 187 310 IPR001214 GO:0005515
Cca02g02144 496 Gene3D SET domain 89 339 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02144 Cca-Chr2 41670522 41681553 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02144 170 326 C2H2 Transcription Factor Family AT2G23740 35.000 5.13e-20 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca02g02144 SET 1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02144 - - gmx:100804657 726.087