Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02143 ATGAGGATGAGAGTTTCCATATGCACTTACCCTTCTTCTATTCTCCTCTCTCTAAAATCAAAACAATCCCCTCTCATGGACCACGCCATGGTAGCCATCGTGAGCGCCATCGGCAGCTTCTTCGTGGTCAGCCTCTTCCTGGCGGCGGCAATCCTCCTCTGCCAGGAACGCAACTCCAACAAGAGGCGGACGCGTGCCAGCGATagccacagccacagccacagccacagccacagccacagccGAAGCCGCGGCGCCTCCCTCTCCCTGGCCACGGTGGAGAACGCCAGCTGGTTCTCCGACCCCAACCTTAGCAAGATCCCCTGGGAGGAGCTCGCACGCGCCACCGAAAACTTCTCCCCGCACCTCATCGTGGGCGACGGCAGCTTCGGCCTCGTCTACAAGGCCCGCCTCTCCACCGGCGCCCTCGTGGCCGTCAAGAAGCTCTCCCCGGACGCCTTCCAAGGGTTCCGCGAATTCACCGCCGAGATGGAAACCCTAAGCAAGCTCCGGCACCCGAACATCGTGAAAATCCTTGGGTACTGGGCCTCCGGGTCAGAACGGCTCCTGGTGTACGAGTTCATCGAAAAGGGGAACCTGGACCAGTGGCtccacgagcccgatcccgatccctcccgctcccCCCTTTCCTGGGAAACCCGGGTCCACATCATCCGCGGCGTGGCCCACGGGCTCTGCTACCTCCACGGCCTGGAGAAGCCCGTGATTCACCGCGACATCAAGGCCAGCAACATCCTCCTGGACTCCAACTTCGAGGCCCATATTGCGGACTTTGGGCTGGCCCGCAGGATGGAGAAGACCCACTCCCACGTGTCCACCCAGTCGGCCGGAACCATTGGGTACATGCCTCCCGAGTACAGAGACGGGTCGAATGTGGCGAACACGAAGGTGGACGTGTACAGTTTCGGCGTGTTGATGATTGAGACGGCCTCCAGTCACCGGCCCAATTTGCCGATGAAGTTGGGCCAGGACGACATTGGCATGGTCCAGTGGGCTAGGAAGATGAGGGATCAAAATGCAGAGATGCAGATGGTTGATGGGAGGGAAGGGTTCCGGGTAGATAGTGTGAAGGAGTACGTCCGCATCGCTTGCGAGTGCACCGCTGAGTTGCAGAAGGACAGACCCGAAATGCCTCTAGTTGTCAAGTGgatgtgtctgttgctagtgaccttggttttgatcaacctgtgtggcacccaacaagttgtggtatcctttctttga 1245 0.5253 MRMRVSICTYPSSILLSLKSKQSPLMDHAMVAIVSAIGSFFVVSLFLAAAILLCQERNSNKRRTRASDSHSHSHSHSHSHSRSRGASLSLATVENASWFSDPNLSKIPWEELARATENFSPHLIVGDGSFGLVYKARLSTGALVAVKKLSPDAFQGFREFTAEMETLSKLRHPNIVKILGYWASGSERLLVYEFIEKGNLDQWLHEPDPDPSRSPLSWETRVHIIRGVAHGLCYLHGLEKPVIHRDIKASNILLDSNFEAHIADFGLARRMEKTHSHVSTQSAGTIGYMPPEYRDGSNVANTKVDVYSFGVLMIETASSHRPNLPMKLGQDDIGMVQWARKMRDQNAEMQMVDGREGFRVDSVKEYVRIACECTAELQKDRPEMPLVVKWMCLLLVTLVLINLCGTQQVVVSFL 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02143 414 ProSiteProfiles Protein kinase domain profile. 119 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02143 414 Gene3D Transferase(Phosphotransferase) domain 1 195 393 - -
Cca02g02143 414 SMART serkin_6 119 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02143 414 Pfam Protein tyrosine and serine/threonine kinase 125 388 IPR001245 GO:0004672|GO:0006468
Cca02g02143 414 Gene3D Phosphorylase Kinase; domain 1 78 194 - -
Cca02g02143 414 MobiDBLite consensus disorder prediction 62 86 - -
Cca02g02143 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672|GO:0006468
Cca02g02143 414 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Cca02g02143 414 PANTHER RECEPTOR SERINE-THREONINE PROTEIN KINASE 26 390 - -
Cca02g02143 414 PANTHER OS01G0253100 PROTEIN 26 390 IPR045271 GO:0004714|GO:0006468
Cca02g02143 414 SUPERFAMILY Protein kinase-like (PK-like) 100 391 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02143 Cca-Chr2 41664540 41666872 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02143 79 391 Receptor kinase-like Gene Family AT5G07280 44.620 9.16e-67 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Cca02g02143 PK_Tyr_Ser-Thr 9.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02143 - - ccaj:109812504 793.497