Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02130 ATGACCTCCAAAGCTCCCCACCCTGATTCAACTGATGCATTGAAGTCTAAAATGTCTGTTCAAAAGGATCCAGATAAATTCTTCGTGTCCATCAGTGAAGGAGAGAAAAAGCCTTTTAATTTTTTGCGCGCTCTATATGATGGATGCATTGCTGGAGGTGTTGCTGGTGTCGTTGTAGAAACGGCTTTATACCCCATTGATACCATCAAAACTCGACTACAGGTTGCTCGTGATGGAGGGAAAATTGTTTTCAAGGGTTTGTACTCTGGATTGTCTGGAAATCTTGTTGGTGTCTTGCCAGCTTCAGCAATTTTTATTGGTGTGTATGAACCTACAAAGCAGCAATTGCTAAAGTCTTTGCCTGAGAATCTCAGTGCTGTGGCTCATTTTGCTGCAGGCGCTATTGGTGGCATTGCTTCTTCTATTGTTCGTGTTCCAACTGAGGTTGTTAAGCAAAGGATGCAAATTGGGCAATTTAGATCAGCCCCGGACGCTGTTCGTCTTATTGTTGCAAATGAGGGTTTTAAAGGTCTTTTTGCGGGATATGGATCTTTCTTATTACGAGATTTACCATTTGATGCTATAGAATTATGCATTTACGAGCAGCTGCGTATTGGGTATAAACTAGCGGCAAAAAGAGATCCTAATGATCCGGAGAATGCTATGCTTGGGGCAGTGGCTGGTGCCATAACTGGAGCAGTCACAACTCCTCTTGATGTAGTAAAGACCAGGTTGATGGTTCAGGGATCACAAAACCATTACAAAGGCATTAGTGATTGTGTGAGGACAATAGTTAAAGAAGAAGGAACTCATGCTCTTTTTAAGGGTATTGGGCCTAGAGTTTTGTGGATAGGAGTTGGAGGTTCAATATTTTTTTGTGTTCTCGAGAAGACTAAGCAAATTCTTGCTCAGAGGAGGCACCCCAAAGCTGAGATTCAGAAGTGA 945 0.4243 MTSKAPHPDSTDALKSKMSVQKDPDKFFVSISEGEKKPFNFLRALYDGCIAGGVAGVVVETALYPIDTIKTRLQVARDGGKIVFKGLYSGLSGNLVGVLPASAIFIGVYEPTKQQLLKSLPENLSAVAHFAAGAIGGIASSIVRVPTEVVKQRMQIGQFRSAPDAVRLIVANEGFKGLFAGYGSFLLRDLPFDAIELCIYEQLRIGYKLAAKRDPNDPENAMLGAVAGAITGAVTTPLDVVKTRLMVQGSQNHYKGISDCVRTIVKEEGTHALFKGIGPRVLWIGVGGSIFFCVLEKTKQILAQRRHPKAEIQK 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02130 314 PRINTS Mitochondrial carrier protein signature 48 61 IPR002067 GO:0055085
Cca02g02130 314 PRINTS Mitochondrial carrier protein signature 61 75 IPR002067 GO:0055085
Cca02g02130 314 PRINTS Mitochondrial carrier protein signature 224 246 IPR002067 GO:0055085
Cca02g02130 314 Pfam Mitochondrial carrier protein 124 204 IPR018108 -
Cca02g02130 314 Pfam Mitochondrial carrier protein 48 118 IPR018108 -
Cca02g02130 314 Pfam Mitochondrial carrier protein 219 304 IPR018108 -
Cca02g02130 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 219 301 IPR018108 -
Cca02g02130 314 PANTHER S-ADENOSYLMETHIONINE CARRIER 1, CHLOROPLASTIC/MITOCHONDRIAL 8 310 - -
Cca02g02130 314 SUPERFAMILY Mitochondrial carrier 49 296 IPR023395 -
Cca02g02130 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 206 IPR018108 -
Cca02g02130 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 43 115 IPR018108 -
Cca02g02130 314 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 8 310 - -
Cca02g02130 314 Gene3D Mitochondrial carrier domain 45 313 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02130 Cca-Chr2 41518383 41526636 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02130 132 304 Chloroplast and Mitochondria Gene Families AT2G30160 29.282 6.10e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02130 K15111 - gmx:100800051 521.931