Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02116 ATGGCGGCTGCGATTCCCACACCCATGACTCAGTCTGTGGCGGCGGCGGCTCAGGTGACGGCTCCGGCGGCCGCATTGGGCGGAGGATCATTTGTCAATGCGTCGCTGTACGTCGGCGATCTCGAGGGTAACGTAAACGAGGGACAGCTTTATGATCTGTTCAGCCAGGTGGCTCAGATTGTTTCAATTAGGGTTTGCAGAGATCAAGCCAAGCGATCCTCTCTTGGTTACGCTTATGTCAACTTCTCTAACGCTCAGGACGCTGCCAATGCAATGGAACTTCTGAACTTCACTCCTCTGAATGGAAAACCGATTCGAATTATGTTTTCTCAACGTGATCCAAGCATTCGGAAAAGTGGATTTGGCAATGTGTTCATTAAGAATCTGGATACATCAATTGATAACAAGGCATTACATGACACTTTTGCTGCCTTTGGTAATGTACTTTCTTGTAAAGTGGCTGTTGATGGCAGTGGCCAGTCAAAAGGGCATGGTTTTGTTCAGTTTGACAATGAGGAGGCTGCCCAGAATGCAATCAAACAGTTGAATGGAATGCTTATAAATGATAAACAAGTCTATGTTGGACTCTTTATGCGGCGCCAGGAAAGGGCTCATGCAAATGGGTCACCAAAATTCACTAATGTATATGTGAAAAATTTTACTGAAACATATACCGATGAAGACCTGAAGAAGCTATTTGGCCCCTATGGTACAATAACCAGTGCAACAGTTATGAGAGATGTGAATGGGAACTCTAAATGTTTTGGTTTTGTGAATTTCCAGAGTCCAGATGCAGCTGCTGCTGCTGTTGAGAGGTTAAATGGAACTACTATCAATGATGACAAGGTTTTATATGTGGGGAGAGCTCAGAGGAAAGCAGAAAGAGAGGCTGAGTTGAAAGCCAAAATTGAGCAGGAAAGAATTAGTAGATATGAAAAACTACAAGGTGCTAATTTGTACTTGAAAAATCTTGATGACAGCTTCGGTGATGAGAAGTTGAAGGATCTATTTTCAGAGTTTGGAACTATAACATCTTGCAAGGTAATGATTGATTCAAATGGGCATAGCAAGGGGTCTGGTTTTGTGGCTTTTTCTACTCCCGAGGAAGCAAGTAAAGCTTTGAATGAAATGAATGGAAAGTTGATTGGACGAAAGCCCCTTTATGTTGCTGTGGCCCAACGCAAAGAAGAGAGGAAGGCTCACTTACAGGCTCAGTTTGCTCAAATCCGACCACATGGTGGAATGGCACCTCTACCTGCCGGAATTCCTGTGTATCATCCAGGGGCACCAAGGCTTGCTCCTCAACAGGTGTATTTTGGTCAAGGCACACCTGGCTTCATACCACCACAGCCTGCTGGATATTCTTTCCAGCAACAAATCTTGCCAGGAATGCGGCCTGGTGTCGCCCCCAATTTCATTATGCCTTATCATCTTCAAAGACAGGGGCAGCCTGGACAGAGAACCGGTGTTAGGCGGAATGGAAATATACAACAGGTGCAACAAAACCAGCACATGCTACATCGTAATTCCAACCAAGGGTTCAGATACATGTCCAATGGTCGAAATAGCATGGATCCATCTTTAGTTTCTCACAGTCTCATGGGTCCAATGATGCCTATACCCTTCGATGGATCTGGAGTTGCATCAACTCCTAATGATAATCATCAGCGTCCTGGAGCATTGTCTACCACACTTGCCTCAGCTCTGGCATCTGCTACTCCAGAAAATCAGCGCTTGATGTTGGGTGAACATCTATATCCCCTTGTGGATAGTCTCACACCAAACCAATATACAGCAAAGGTGACAGGGATGTTGCTGGAAATGGACCAGTCAGAGGTAATCAATCTTATTGAGTCTCCGGAGGACCTGAAGATAAAGGTGTCGGAGGCAATGCAGGTTCTGCGTGAGGCTGCATCTGGTTCTGAAGTTGGTGATCAACTAGGCTCGATGTCGTTGAATGATTGA 1965 0.4534 MAAAIPTPMTQSVAAAAQVTAPAAALGGGSFVNASLYVGDLEGNVNEGQLYDLFSQVAQIVSIRVCRDQAKRSSLGYAYVNFSNAQDAANAMELLNFTPLNGKPIRIMFSQRDPSIRKSGFGNVFIKNLDTSIDNKALHDTFAAFGNVLSCKVAVDGSGQSKGHGFVQFDNEEAAQNAIKQLNGMLINDKQVYVGLFMRRQERAHANGSPKFTNVYVKNFTETYTDEDLKKLFGPYGTITSATVMRDVNGNSKCFGFVNFQSPDAAAAAVERLNGTTINDDKVLYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDSFGDEKLKDLFSEFGTITSCKVMIDSNGHSKGSGFVAFSTPEEASKALNEMNGKLIGRKPLYVAVAQRKEERKAHLQAQFAQIRPHGGMAPLPAGIPVYHPGAPRLAPQQVYFGQGTPGFIPPQPAGYSFQQQILPGMRPGVAPNFIMPYHLQRQGQPGQRTGVRRNGNIQQVQQNQHMLHRNSNQGFRYMSNGRNSMDPSLVSHSLMGPMMPIPFDGSGVASTPNDNHQRPGALSTTLASALASATPENQRLMLGEHLYPLVDSLTPNQYTAKVTGMLLEMDQSEVINLIESPEDLKIKVSEAMQVLREAASGSEVGDQLGSMSLND 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02116 654 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 561 639 IPR002004 GO:0003723
Cca02g02116 654 Gene3D - 30 122 IPR012677 -
Cca02g02116 654 Gene3D - 198 300 IPR012677 -
Cca02g02116 654 PANTHER POLYADENYLATE-BINDING PROTEIN 28 642 - -
Cca02g02116 654 SMART rrm2_1 214 286 IPR003954 GO:0003676
Cca02g02116 654 SMART rrm2_1 35 108 IPR003954 GO:0003676
Cca02g02116 654 SMART rrm2_1 123 195 IPR003954 GO:0003676
Cca02g02116 654 SMART rrm2_1 318 390 IPR003954 GO:0003676
Cca02g02116 654 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 34 635 IPR006515 GO:0003723
Cca02g02116 654 SUPERFAMILY RNA-binding domain, RBD 34 201 IPR035979 GO:0003676
Cca02g02116 654 PANTHER RNA BINDING PROTEIN 28 642 - -
Cca02g02116 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 282 IPR000504 GO:0003723
Cca02g02116 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 192 IPR000504 GO:0003723
Cca02g02116 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Cca02g02116 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 319 387 IPR000504 GO:0003723
Cca02g02116 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Cca02g02116 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 291 IPR000504 GO:0003723
Cca02g02116 654 Gene3D - 560 639 - -
Cca02g02116 654 SMART rrm1_1 214 287 IPR000504 GO:0003723
Cca02g02116 654 SMART rrm1_1 318 390 IPR000504 GO:0003723
Cca02g02116 654 SMART rrm1_1 123 195 IPR000504 GO:0003723
Cca02g02116 654 SMART rrm1_1 35 108 IPR000504 GO:0003723
Cca02g02116 654 SUPERFAMILY PABC (PABP) domain 500 639 IPR036053 GO:0003723
Cca02g02116 654 CDD RRM3_I_PABPs 212 292 - -
Cca02g02116 654 CDD RRM4_I_PABPs 316 394 - -
Cca02g02116 654 SMART poly_2 573 637 IPR002004 GO:0003723
Cca02g02116 654 CDD RRM1_I_PABPs 35 114 - -
Cca02g02116 654 Pfam Poly-adenylate binding protein, unique domain 569 634 IPR002004 GO:0003723
Cca02g02116 654 Gene3D - 301 403 IPR012677 -
Cca02g02116 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 317 394 IPR000504 GO:0003723
Cca02g02116 654 Gene3D - 123 196 IPR012677 -
Cca02g02116 654 CDD RRM2_I_PABPs 120 195 IPR045305 -
Cca02g02116 654 Coils Coil 286 314 - -
Cca02g02116 654 SUPERFAMILY RNA-binding domain, RBD 212 398 IPR035979 GO:0003676
Cca02g02116 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 199 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02116 Cca-Chr2 41380135 41384686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02116 1 635 Eukaryotic Initiation Factors Gene Family AT1G22760 57.364 0.0 688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02116 K13126 - gmx:100783163 1152.89