Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02109 ATGGCCACCTCCCAGTCCCAGCATCGCTGCGTTTTCGTTGGGAATATACCGTATGATGCCACAGAAGAACAGCTTGTCGAAATCTGCCAGGAGGTTGGTCCTGTAGTCTCATTCAGATTAGTTATTGACAGAGAAACTGGGAAGCCAAAAGGTTATGGATTCTGTGAGTATAAGGATGAAGAGACAGCTTTAAGTGCTCGGCGAAATCTTCAGGGTTATGAAATTAATGGGCGGCAATTACGTGTTGATTTTGCCGAAAATGATAAAGGGACTGATAGAAATAGAGAACAGGGTCGTGGTGGGCCTGGAATGACAACAAATGTTGACCCTCAGAAACAAGTTGGTGGCCCAGCTGTCCATGGGGAAGCAGTTCAGCATCAGCCTATTGGTCTTCATATTGCCATAACAGCTGCAACTGTCATGACAGCAGCTCTAGGTGGTGCTCAGTTTGGCATCCAGTCAAATCAAAATAGTTTGCAGAATCAGTCAGCATTGGCACATGATCCTTTAACTCTGCATCTGGCCAAAATGTCCAGGAGTCAGTTGACTGAGATTATATCTGAGCTCAAGGGAATGGCTACACAAAACAAGGAACTGGCTCGCCAGCTGTTGCTTTCAAGGCCACAGTTGCCCAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGAATGGTGACTTCTCAAGTGTTACAAATGCCAAACCTTAGGATGGTTTCAGATCAAGCCTCACAGTCTTTAATGAGTGAAGGCCAGCTGGGTCAGCCATCATTGATTCAAACTGTGTCCGGCCTTCCTCCTCATGGGCAGAACAAGTTGCAGTCTGGTTTGACACCTTATGCTCAAGAAGGCAAAATCAGCACAATACCTCATAATCCTTTGGTTCCTAATCAATTAACTGGACATCCAAAGCTTACAGTGCAGCCTCGAATTCCCCTTCAACAACATCCAAGCAACCTTGTAATTCCGGGAACATTGTCAGGGCAGTCTAGTTTAATGCTTCCTTCTGTGCGTCCTCCGGGTTTGGGCAGTTTGTCTGTTAGGCCTCCAATTCAACCAGCAACTTCAACTGCTCTGAACCAGCAAATGCATGCCTCTTTGCTACAGCATTCTGTACATGTTGGAAACTCAACTGTAGGACATAATATTCAAATGGTCCGCCCAGATGCCAGCTTTCAGCAGCCTGGCCCCTCCAGTTCATCAGCTAATTCTCAGTTATTGAGTAAAGGTGATAAATCTTCTAAAGTTCTTGACGATTTAAATTGGGCTAAGAGAACTAATACATATTCAAACATGCCGTTGGGAGTAGAGAAAACAAACATGGTTCACATGCCTGTCACTGATGGATCATCTCATGTCCTTGGAAGAAGCTCATTGCCTGTACATGCAGCTCCTAAAGCAGAAGGACAATATTCTGAGCAACAATCTTCTCAGCTCACACCTGATGTGGAATCTGTTCTGCTCCAACAAGTATTGAATCTGACACCAGAGCAATTGAGTTCCTTGCCACCAGAGCAGCAACAGCAGGTCATTCAGCTCCAGCAGGCTCTTCGGCGAGATCAGATGCAGCCCTCATAA 1572 0.4567 MATSQSQHRCVFVGNIPYDATEEQLVEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGTDRNREQGRGGPGMTTNVDPQKQVGGPAVHGEAVQHQPIGLHIAITAATVMTAALGGAQFGIQSNQNSLQNQSALAHDPLTLHLAKMSRSQLTEIISELKGMATQNKELARQLLLSRPQLPKALFQAQIMLGMVTSQVLQMPNLRMVSDQASQSLMSEGQLGQPSLIQTVSGLPPHGQNKLQSGLTPYAQEGKISTIPHNPLVPNQLTGHPKLTVQPRIPLQQHPSNLVIPGTLSGQSSLMLPSVRPPGLGSLSVRPPIQPATSTALNQQMHASLLQHSVHVGNSTVGHNIQMVRPDASFQQPGPSSSSANSQLLSKGDKSSKVLDDLNWAKRTNTYSNMPLGVEKTNMVHMPVTDGSSHVLGRSSLPVHAAPKAEGQYSEQQSSQLTPDVESVLLQQVLNLTPEQLSSLPPEQQQQVIQLQQALRRDQMQPS 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02109 523 Pfam Hinge domain of cleavage stimulation factor subunit 2 160 230 IPR025742 -
Cca02g02109 523 Pfam Transcription termination and cleavage factor C-terminal 485 517 IPR026896 GO:0031124
Cca02g02109 523 Gene3D - 477 522 IPR038192 -
Cca02g02109 523 Gene3D - 151 232 - -
Cca02g02109 523 Gene3D - 1 117 IPR012677 -
Cca02g02109 523 MobiDBLite consensus disorder prediction 83 111 - -
Cca02g02109 523 MobiDBLite consensus disorder prediction 387 409 - -
Cca02g02109 523 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Cca02g02109 523 MobiDBLite consensus disorder prediction 387 410 - -
Cca02g02109 523 SUPERFAMILY RNA-binding domain, RBD 5 105 IPR035979 GO:0003676
Cca02g02109 523 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 1 518 - -
Cca02g02109 523 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
Cca02g02109 523 SMART rrm1_1 10 83 IPR000504 GO:0003723
Cca02g02109 523 CDD RRM_CSTF2_CSTF2T 11 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02109 Cca-Chr2 41281163 41288980 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02109 11 84 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 2.97e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02109 K14407 - gmx:100794399 868.996