Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca02g02109 | ATGGCCACCTCCCAGTCCCAGCATCGCTGCGTTTTCGTTGGGAATATACCGTATGATGCCACAGAAGAACAGCTTGTCGAAATCTGCCAGGAGGTTGGTCCTGTAGTCTCATTCAGATTAGTTATTGACAGAGAAACTGGGAAGCCAAAAGGTTATGGATTCTGTGAGTATAAGGATGAAGAGACAGCTTTAAGTGCTCGGCGAAATCTTCAGGGTTATGAAATTAATGGGCGGCAATTACGTGTTGATTTTGCCGAAAATGATAAAGGGACTGATAGAAATAGAGAACAGGGTCGTGGTGGGCCTGGAATGACAACAAATGTTGACCCTCAGAAACAAGTTGGTGGCCCAGCTGTCCATGGGGAAGCAGTTCAGCATCAGCCTATTGGTCTTCATATTGCCATAACAGCTGCAACTGTCATGACAGCAGCTCTAGGTGGTGCTCAGTTTGGCATCCAGTCAAATCAAAATAGTTTGCAGAATCAGTCAGCATTGGCACATGATCCTTTAACTCTGCATCTGGCCAAAATGTCCAGGAGTCAGTTGACTGAGATTATATCTGAGCTCAAGGGAATGGCTACACAAAACAAGGAACTGGCTCGCCAGCTGTTGCTTTCAAGGCCACAGTTGCCCAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGAATGGTGACTTCTCAAGTGTTACAAATGCCAAACCTTAGGATGGTTTCAGATCAAGCCTCACAGTCTTTAATGAGTGAAGGCCAGCTGGGTCAGCCATCATTGATTCAAACTGTGTCCGGCCTTCCTCCTCATGGGCAGAACAAGTTGCAGTCTGGTTTGACACCTTATGCTCAAGAAGGCAAAATCAGCACAATACCTCATAATCCTTTGGTTCCTAATCAATTAACTGGACATCCAAAGCTTACAGTGCAGCCTCGAATTCCCCTTCAACAACATCCAAGCAACCTTGTAATTCCGGGAACATTGTCAGGGCAGTCTAGTTTAATGCTTCCTTCTGTGCGTCCTCCGGGTTTGGGCAGTTTGTCTGTTAGGCCTCCAATTCAACCAGCAACTTCAACTGCTCTGAACCAGCAAATGCATGCCTCTTTGCTACAGCATTCTGTACATGTTGGAAACTCAACTGTAGGACATAATATTCAAATGGTCCGCCCAGATGCCAGCTTTCAGCAGCCTGGCCCCTCCAGTTCATCAGCTAATTCTCAGTTATTGAGTAAAGGTGATAAATCTTCTAAAGTTCTTGACGATTTAAATTGGGCTAAGAGAACTAATACATATTCAAACATGCCGTTGGGAGTAGAGAAAACAAACATGGTTCACATGCCTGTCACTGATGGATCATCTCATGTCCTTGGAAGAAGCTCATTGCCTGTACATGCAGCTCCTAAAGCAGAAGGACAATATTCTGAGCAACAATCTTCTCAGCTCACACCTGATGTGGAATCTGTTCTGCTCCAACAAGTATTGAATCTGACACCAGAGCAATTGAGTTCCTTGCCACCAGAGCAGCAACAGCAGGTCATTCAGCTCCAGCAGGCTCTTCGGCGAGATCAGATGCAGCCCTCATAA | 1572 | 0.4567 | MATSQSQHRCVFVGNIPYDATEEQLVEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGTDRNREQGRGGPGMTTNVDPQKQVGGPAVHGEAVQHQPIGLHIAITAATVMTAALGGAQFGIQSNQNSLQNQSALAHDPLTLHLAKMSRSQLTEIISELKGMATQNKELARQLLLSRPQLPKALFQAQIMLGMVTSQVLQMPNLRMVSDQASQSLMSEGQLGQPSLIQTVSGLPPHGQNKLQSGLTPYAQEGKISTIPHNPLVPNQLTGHPKLTVQPRIPLQQHPSNLVIPGTLSGQSSLMLPSVRPPGLGSLSVRPPIQPATSTALNQQMHASLLQHSVHVGNSTVGHNIQMVRPDASFQQPGPSSSSANSQLLSKGDKSSKVLDDLNWAKRTNTYSNMPLGVEKTNMVHMPVTDGSSHVLGRSSLPVHAAPKAEGQYSEQQSSQLTPDVESVLLQQVLNLTPEQLSSLPPEQQQQVIQLQQALRRDQMQPS | 523 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca02g02109 | 523 | Pfam | Hinge domain of cleavage stimulation factor subunit 2 | 160 | 230 | IPR025742 | - | |
Cca02g02109 | 523 | Pfam | Transcription termination and cleavage factor C-terminal | 485 | 517 | IPR026896 | GO:0031124 | |
Cca02g02109 | 523 | Gene3D | - | 477 | 522 | IPR038192 | - | |
Cca02g02109 | 523 | Gene3D | - | 151 | 232 | - | - | |
Cca02g02109 | 523 | Gene3D | - | 1 | 117 | IPR012677 | - | |
Cca02g02109 | 523 | MobiDBLite | consensus disorder prediction | 83 | 111 | - | - | |
Cca02g02109 | 523 | MobiDBLite | consensus disorder prediction | 387 | 409 | - | - | |
Cca02g02109 | 523 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 9 | 87 | IPR000504 | GO:0003723 | |
Cca02g02109 | 523 | MobiDBLite | consensus disorder prediction | 387 | 410 | - | - | |
Cca02g02109 | 523 | SUPERFAMILY | RNA-binding domain, RBD | 5 | 105 | IPR035979 | GO:0003676 | |
Cca02g02109 | 523 | PANTHER | CLEAVAGE STIMULATION FACTOR SUBUNIT 2 | 1 | 518 | - | - | |
Cca02g02109 | 523 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 11 | 81 | IPR000504 | GO:0003723 | |
Cca02g02109 | 523 | SMART | rrm1_1 | 10 | 83 | IPR000504 | GO:0003723 | |
Cca02g02109 | 523 | CDD | RRM_CSTF2_CSTF2T | 11 | 85 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca02g02109 | Cca-Chr2 | 41281163 | 41288980 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca02g02109 | 11 | 84 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 31.081 | 2.97e-07 | 51.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca02g02109 | K14407 | - | gmx:100794399 | 868.996 |