Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02101 ATGGAAAACCTTCGACCATTGATTTACAAAAGCCCCACAAGGAGAAGCTCTAGGAGATCAACAAAGTATCTTGGTGTGAGAAAAAGGGCATGGGGAAGATATGCTGCTGAGATTAGGAACCCTTATACGAAAGAGAGACACTGGCTAGGCACATTTGACACTGCTGAGGCTGCCATAGCTTATGATATTTCTTCTATCAACATTTGTGGCATTATTAATGCAAGAACTAATTTTCATTACCCTTTTCTGTCTCTTccaccacctcctccaccgccaccacccaccCCGGGGTTGGATCCAAGTGTTGGAGGTTGTCCAGAGATGAATGGTGTTTACGAAGGCGATGATGAATGTTTAGTCATTGCTTCCATTTTGCAAAGCTTTTCTAATTCTGGTAACTGTTCTTTCTAG 411 0.3796 MENLRPLIYKSPTRRSSRRSTKYLGVRKRAWGRYAAEIRNPYTKERHWLGTFDTAEAAIAYDISSINICGIINARTNFHYPFLSLPPPPPPPPPTPGLDPSVGGCPEMNGVYEGDDECLVIASILQSFSNSGNCSF 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02101 136 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Cca02g02101 136 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF088 1 125 - -
Cca02g02101 136 Pfam AP2 domain 21 62 IPR001471 GO:0003700|GO:0006355
Cca02g02101 136 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 125 - -
Cca02g02101 136 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Cca02g02101 136 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Cca02g02101 136 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Cca02g02101 136 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Cca02g02101 136 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Cca02g02101 136 CDD AP2 22 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02101 Cca-Chr2 41201233 41201643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02101 8 80 AP2-EREBP Transcription Factor Family AT1G12890 60.759 1.29e-25 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca02g02101 AP2 3.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02101 - - gmx:100816937 196.052