Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02088 ATGGCCGGCAATCCCACCACCACCGCCTCCTCCGCATTATCTCCCGAGAAATTCAATTTCTCGCCCGATTACCCCTCAAAAATCCCCCTCACTTCGGATCAGCTCAAACACTGCACCCAGGCCCTCAACCTTCTCAAGGACAAATTCCACACTCCTCACAAAATCACTGAGGAGTTCGCACACTTGCAGGTTCGCACCCTAATTCACGATTCTCCTAACAAATCGCTAACATTGAACTCACTGTGTTGTCTTGTGTTGTGGTTTCAGGGGAACAGAATAACACCGAGTGAGATGAGGAGAAGATGCACCGTCGCTCTCGACGCCGTCAATTTGAGCAAGAATCGTTACACGGACGTTTTACCATTTGACAACAACAGGGTTGTTCTCAAGTCAAGTACAGATTATAGACATGCAGCACTGGGGTATATCAATGCAAGCCTTGTCTCGACCCCTGGAAATGTGTCCCAGTTTATTGCCACACAAGGTCCACTTCCGCATACTTACGAGGATTTCTGGGAAATGATTATTCAATATCACTGCCCTGCGATTATCATGCTTACTAGGTTGGTGGACCATTACAGGACAGTAAAGTGTGGAGATTATTTTCAAGCTGAGGATGGACCCAGAGAAGTTGGTAATATTTCTATTGTTGGTAAATGGATGAGCACTACTGAAACTTCGCTGGTGCTGCGCCATTTAGTGGTGAACCATAGAGAGGTAGAAGAGGCCGCATTATCTGTTTTGCATATTCAGTATCCTGAATGGCCCGACCATGGAGTTCCCAAAGATACTTTTGCTGTGCGTGAAATTTTGAAAAGATTGTACCATTTACCTCCCAACCTTGGCCCAATAGTGGTGCACTGCAGTGCAGGTCCCAGCGTATTGGAATGGTTCAGACCAAGGATCAGTACGAATTCTGCTATAAAGCTATCATTGATGAACTGGAAGACCTTGTATCTCAGCAGTAATAACAGTAGAAGGGGTGCTGGAAGGATGTTTAGCTTGAAGCTAACTTTCAATTCTTCGATCTCTATTTTTGGTTCCCTGCAATGCTTATGTCTCCTGGCAGCTGAGTCTGAAACTCTGGCATTCCGGAGACTTTATCGAACTTATTCTCAAGCTTTCATAGTGGTTACAAAAGCAGTCCTCACTCACATAAGTGAAGTGAGAATAGAAATTAGAAACACATTGGTGTCTCTGCCATGGCCGTCATCGTCAACACAAGAAGAGCTGAAACACTGCACTGAGGCGCTCGCCTTATTAAAGCTCAAGCTCCACCCCTCTGATCCCACCATCGCCAACAACTTCGCCATCTTAGAGGGTTATTCTGAAATCAACAGGAGGTTATATCAACGCAAGCTTTATCTCGACCTCGTTCCCTGGAAAGATATCAAAATTTATTGCGACCCAAGGTCCACTAGAACGGACTTATGA 1434 0.4547 MAGNPTTTASSALSPEKFNFSPDYPSKIPLTSDQLKHCTQALNLLKDKFHTPHKITEEFAHLQVRTLIHDSPNKSLTLNSLCCLVLWFQGNRITPSEMRRRCTVALDAVNLSKNRYTDVLPFDNNRVVLKSSTDYRHAALGYINASLVSTPGNVSQFIATQGPLPHTYEDFWEMIIQYHCPAIIMLTRLVDHYRTVKCGDYFQAEDGPREVGNISIVGKWMSTTETSLVLRHLVVNHREVEEAALSVLHIQYPEWPDHGVPKDTFAVREILKRLYHLPPNLGPIVVHCSAGPSVLEWFRPRISTNSAIKLSLMNWKTLYLSSNNSRRGAGRMFSLKLTFNSSISIFGSLQCLCLLAAESETLAFRRLYRTYSQAFIVVTKAVLTHISEVRIEIRNTLVSLPWPSSSTQEELKHCTEALALLKLKLHPSDPTIANNFAILEGYSEINRRLYQRKLYLDLVPWKDIKIYCDPRSTRTDL 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02088 477 SMART PTPc_3 85 376 IPR000242 GO:0004725|GO:0006470
Cca02g02088 477 Gene3D Protein tyrosine phosphatase superfamily 85 296 IPR029021 -
Cca02g02088 477 ProSiteProfiles PTP type protein phosphatase domain profile. 110 291 IPR000242 GO:0004725|GO:0006470
Cca02g02088 477 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 88 291 IPR029021 -
Cca02g02088 477 Pfam Protein-tyrosine phosphatase 110 291 IPR000242 GO:0004725|GO:0006470
Cca02g02088 477 PRINTS Protein tyrosine phosphatase signature 283 301 IPR000242 GO:0004725|GO:0006470
Cca02g02088 477 PRINTS Protein tyrosine phosphatase signature 157 177 IPR000242 GO:0004725|GO:0006470
Cca02g02088 477 PRINTS Protein tyrosine phosphatase signature 141 148 IPR000242 GO:0004725|GO:0006470
Cca02g02088 477 PRINTS Protein tyrosine phosphatase signature 245 262 IPR000242 GO:0004725|GO:0006470
Cca02g02088 477 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 88 291 - -
Cca02g02088 477 PANTHER PROTEIN-TYROSINE-PHOSPHATASE PTP1 88 291 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02088 33 291 Protein tyrosine phosphatase (PTP) family AT1G71860 59.004 1.51e-107 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02088 - - gmx:548044 451.825