Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02082 ATGGGTACCTCGAATCTTCTCTTGTTCTTCTCTTTGTTGAGTCTGTGTGCTATGGCGGCTTCCAAGGTGGTGCTGATTGGGAGTAATATCACTCTCTCCTTCGATGATATTGAAGCTAATTTTGCCCCAACAATCAAAGGTTCTGGAGAATATGGGGTCTTGTATTTAGCAGAGCCGCTTGATGCGTGTACAGAACTGACAAATAAAGTTGAACAACTACCCAATACGAGTTCACCTTTTGCTTTGGTTGTTAGAGGGGGATGTAGCTTTGAGGAAAAAGTCAGAAGGGCACAAATGGCTGGCTTCAAAGCTGTAATTGTCTATGACAATGAAGATGGCGGTGTCTTGGTTGCAATGGCAGGaaattctgctggtataagaatacatgctgtatttgtatcaaaagcttcgggtgaaatactaaagaaatatgctgggttgactaatgtggaaatatggctcattccaacttttgaaaactcagcatggtctatcatgGCAATTTCATTTATTTCCCTGCTAGCTATGTCTGCGGTGCTGGCAACTTGTTTCTTTGTCCGCCGGCATCGCATAAGAAGAGAAAGGCCTCGAGCTTCTCTTGTTCGTGAATTTCATGGTATGAGTAGTCGTCTAGTGAAAGCAATGCCAAGTTTGATATTTACTGCTGTTTTGGAAGATAACTGTACATCAAGAACATGTGCTATATGCCTTGAAGACTATTGTGTCGGTGAGAAGCTCAGGATTCTGCCCTGCTGTCACAAGTTTCATGCTGCCTGTGTGGATTCTTGGCTTACTTCATGGAGAACCTTTTGTCCAGTTTGCAAGCGTGATGCAAGAACTGGCTTAACTGATCCACCACCTTCAGAATCCACTCCCTTGCTCTCATCAAGCCCAGCATCTATGGCATCCTCTCTTGCATCTTCTGTGAGATCGTCACTGGCTTCATCTTCAGCAATACAAATTGTCCGGACAGCTTCACAGACCCCATCTGTTTCCCGAAACCACTCCATATCTAGTACACCTTATGTTCAGCCATCTCTCAGGTCCTCCTACCATCAATCCCCCTCCCTAAGCATCAGCCGAAGCTCTGTAGATCTTAGGAATGCATCCCAAAGATCGCTAGCTTCTCACTTGAATTCACCACGTTCCACGGGATATCCATCTTTGTCTTCTCTTAACTCGAGGTACATGTCTCCACATATTCCAAGTCCAAGCAATGCTTCAGTAAGTTATCTCGGTTCATCCAGTCATCAACAGCATCCTCTCCGATATAGTGAGTCAGCTGCAAGCTTCTCACCATTTGCATCAACACACTCCCTTCCGGAATGTTAA 1332 0.4077 MGTSNLLLFFSLLSLCAMAASKVVLIGSNITLSFDDIEANFAPTIKGSGEYGVLYLAEPLDACTELTNKVEQLPNTSSPFALVVRGGCSFEEKVRRAQMAGFKAVIVYDNEDGGVLVAMAGNSAGIRIHAVFVSKASGEILKKYAGLTNVEIWLIPTFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPRASLVREFHGMSSRLVKAMPSLIFTAVLEDNCTSRTCAICLEDYCVGEKLRILPCCHKFHAACVDSWLTSWRTFCPVCKRDARTGLTDPPPSESTPLLSSSPASMASSLASSVRSSLASSSAIQIVRTASQTPSVSRNHSISSTPYVQPSLRSSYHQSPSLSISRSSVDLRNASQRSLASHLNSPRSTGYPSLSSLNSRYMSPHIPSPSNASVSYLGSSSHQQHPLRYSESAASFSPFASTHSLPEC 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02082 443 MobiDBLite consensus disorder prediction 330 349 - -
Cca02g02082 443 PANTHER PROTEASE-ASSOCIATED (PA) RING/U-BOX ZINC FINGER PROTEIN 1 359 - -
Cca02g02082 443 SUPERFAMILY PA domain 79 145 IPR046450 -
Cca02g02082 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 280 IPR013083 -
Cca02g02082 443 SMART ring_2 233 274 IPR001841 -
Cca02g02082 443 MobiDBLite consensus disorder prediction 361 391 - -
Cca02g02082 443 CDD PA_C_RZF_like 19 162 IPR044744 -
Cca02g02082 443 CDD mRING-H2-C3H2C2D_ZSWM2 232 275 - -
Cca02g02082 443 MobiDBLite consensus disorder prediction 403 443 - -
Cca02g02082 443 Gene3D - 21 155 - -
Cca02g02082 443 ProSiteProfiles Zinc finger RING-type profile. 233 275 IPR001841 -
Cca02g02082 443 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 359 - -
Cca02g02082 443 SUPERFAMILY RING/U-box 223 286 - -
Cca02g02082 443 Pfam Ring finger domain 232 275 IPR001841 -
Cca02g02082 443 Pfam PA domain 79 141 IPR003137 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02082 Cca-Chr2 40947012 40953223 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02082 20 442 C3H Transcription Factor Family AT1G22670 48.252 8.97e-121 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02082 K15692 - gmx:100791248 758.829