Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02080 ATGCCAACACCAACACCAACACCAACGGCAGCAGCGTTTGGTGGTGTAGAAACTCCTCCAAATGGAGACTCATCTAACACCAAACACAGCCCTCAAGAATCGCGTGACCTCCCACCTTTTTTGTCTTGTTCTTACCCCATCACTCTGAAGTTCATGGACGTGGCATACCGCTTGAAGATAGAGGACAAACAAAGAAGCGGAGGGAGCATCAAGAGATTGTTTGCTACGCACGAATCCTCACCGTCGGATCAAAGATCAAGGCAGGAGCGAACTATTTTAAAAGGCGTGACGGGGATAGCGTACCCAGGGGAGATCTTAGCGGTGCTGGGCCCATCAGGGAGCGGAAAATCAACGCTCCTAAACGCGCTCGCGGGGAGGCTCCATGGCCACGGCCTCACCGGAACAATCCTCGCCAACTCCGCCAAGCTCACCAAACCGGTTCTCCGCCGAACCGGCTTCGTCACGCAGGACGACATCCTGTACCCGCACTTAACCGTGCGCGAGACGCTCGTCTTCTGCGCCATGCTGCGCCTCCCGCGCGCGGTGCCTCGCGCGGCCAAGATGGCGGCGGCCGAGGCGGCCATCGCCGAGCTAGGGCTGGGGAAGTGCGAGAACACCATCATCGGGAACAGCTTCATCCGCGGCGTCTCCGGCGGGGAGAGGAAGCGCGTGAGCATCGCGCACGAGATGCTGGTGGACCCCTCGCTCCTCATACTGGACGAGCCTACCTCCGGTTTGGACTCGACGGCGGCGCACCGGCTCCTGGCGACGCTGGCGTCGCTGGCGAAGAAGGGGAAGACGGTGGTTACCTCGGTGCACCAACCTTCGAGCCGAGTCTACCAGATGTTCGACAAAGTTTTGGTGCTATCGGAAGGTCAGTGTTTGTACTTTGGCAAAGGAGGCGACGCCATGCGCTACTTTGAGTCGGTTGGTTTCGCGCCGTCTTTTCCGATGAATCCGGCGGATTTTCTGCTCGATCTCGCCAACGGTATTTGCCATGTGGATAGTCAAAGTGAAAGAGATAGACCAAACATAAAGCAAAACCTAATCCAATCATACAACACAGTACTGGGTCCCAAGGTAAAAGCTGCCTGCGTGGACACTGCCAGTGTTCCTGCAAAGAACACACACCCTTTGAGAAGCAGTTCTTCAAAAGAACGTAGACGTAGCGACAGGGTTAGCTTATTTGACTGGTTTTACCAATTCAGTATTCTGCTCCAGAGAAGCCTGAAAGAAAGAAAGCACGAATCCTTCAACACTCTGAGAGTTTTCCAAGTCATTGCTGCAGCATTACTCGCTGGTTTAATGTGGTGGCACTCAGACTATAGGAACATTCAAGATAGGCTTGGCCTACTCTTCTTCATTTCCATCTTTTGGGGAGTTTTCCCGTCCTTCAACTCAGTTTTTGCATTCCCTCAAGAACGTGCCATCTTCATGAAAGAGCGAGCTTCTGGCATGTACACATTGTCCTCCTATTTCATGGCTCGAATTGTTGGAGACCTTCCCATGGAGCTTATTCTTCCCACCATTTTCCTCATTGTGACATATTGGATGGGTGGATTAAAGCCTGATTTGTGGGCTTTTGTGTTGACTTTGTTGGTTGTGCTTGGATACGTGATGGTGTCACAGGGTCTTGGCCTTGCTTTAGGTGCAGCAATAATGGATGCCAAACAGGCTTCCACAGTGGCAGCAGTGACAATGCTAGCATTTGTGTTGACTGGTGGATACTATGTCCATAAGGTGCCATCTTGCATGGCTTGGATCAAATATATATCCACAACCTTCTACTGTTATAGGCTTCTCACTAGAATCCAGTATGGGGATGGCAAGAAGATATCATCTCTATTGGGTTGCTATCATGGTGGCAGTGATATGGGTGGCTGCAAGTTTGTTGAAGAGGATATGGTGGGCCAAATTGGCACTCTGGGGTGCATTGGGGTCTTGCTTTTCATGTTTGTGTTCTACAGATTATTGGCCTACCTTGCTTTGAGGCGCATCAAGAGTTGA 2007 0.5177 MPTPTPTPTAAAFGGVETPPNGDSSNTKHSPQESRDLPPFLSCSYPITLKFMDVAYRLKIEDKQRSGGSIKRLFATHESSPSDQRSRQERTILKGVTGIAYPGEILAVLGPSGSGKSTLLNALAGRLHGHGLTGTILANSAKLTKPVLRRTGFVTQDDILYPHLTVRETLVFCAMLRLPRAVPRAAKMAAAEAAIAELGLGKCENTIIGNSFIRGVSGGERKRVSIAHEMLVDPSLLILDEPTSGLDSTAAHRLLATLASLAKKGKTVVTSVHQPSSRVYQMFDKVLVLSEGQCLYFGKGGDAMRYFESVGFAPSFPMNPADFLLDLANGICHVDSQSERDRPNIKQNLIQSYNTVLGPKVKAACVDTASVPAKNTHPLRSSSSKERRRSDRVSLFDWFYQFSILLQRSLKERKHESFNTLRVFQVIAAALLAGLMWWHSDYRNIQDRLGLLFFISIFWGVFPSFNSVFAFPQERAIFMKERASGMYTLSSYFMARIVGDLPMELILPTIFLIVTYWMGGLKPDLWAFVLTLLVVLGYVMVSQGLGLALGAAIMDAKQASTVAAVTMLAFVLTGGYYVHKVPSCMAWIKYISTTFYCYRLLTRIQYGDGKKISSLLGCYHGGSDMGGCKFVEEDMVGQIGTLGCIGVLLFMFVFYRLLAYLALRRIKS 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02080 668 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 25 666 - -
Cca02g02080 668 SMART AAA_5 102 293 IPR003593 -
Cca02g02080 668 CDD ABCG_EPDR 85 298 - -
Cca02g02080 668 Gene3D - 84 310 IPR027417 -
Cca02g02080 668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 309 IPR027417 -
Cca02g02080 668 MobiDBLite consensus disorder prediction 19 33 - -
Cca02g02080 668 Pfam ABC-2 type transporter 400 605 IPR013525 GO:0016020|GO:0140359
Cca02g02080 668 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 58 316 IPR003439 GO:0005524
Cca02g02080 668 MobiDBLite consensus disorder prediction 1 39 - -
Cca02g02080 668 Pfam ABC-2 type transporter 273 376 IPR043926 GO:0140359
Cca02g02080 668 Pfam ABC transporter 94 244 IPR003439 GO:0005524
Cca02g02080 668 PANTHER ABC TRANSPORTER G FAMILY MEMBER 25 25 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02080 Cca-Chr2 40915914 40922694 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02080 86 352 Calmodulin-binding Proteins AT2G36910 27.636 9.06e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02080 K05681 - gmx:100812127 1159.82