Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02074 atgacgttaacccaaattcctGAGAGATCATCATCAATTGATATGGAATCATGTGTGCCTCCAGGATTTAGATTTCATCCAACAGAAGAGGAGCTTGTGGGGTACTACCTCAAGAGAAAGATCAACTCGCTAAAAATCGACCTAGATGTTATTGTTGAGATTGATCTCTACAAAATGGAACCATGGGACATACAAGATAGGTGCAAGCTAGGGTATGAGCAACAGAATGAGTGGTACTTTTTCAGCCACAAAGATAAGAAGTATCCAACAGGGACAAGAACTAACAGGGCCACTGCTGCTGGATTCTGGAAAGCAACAGGAAGGGACAAAGCTGTAATGTCGAAAAATAGAATCATAGGGATGAGGAAGACCTTGGTCTTCTACAAGGGACGTGCCCCTAATGGAAGGAAAACAGACTGGATTATGCATGAATATAGGCATCAAACCTCTGAACATGGCCCTCCACAGGAAGAAGGATGGGTGGTGTGTCGAGCATTTCGAAAGCCTAGTCCAAGTCAAAGGCAAGGTTATGAACCATGGTGCAGCAGTAGCAGTAGTCAACAACAACACTTCTTCAGAGATCAAAGCTACGCAAGACCCTTATCCATTGCTGACATTTTGAACGAAACAAATGTGGTTCAGGTTCTTCCTTCTGAAGGTGCAAGTTTTAGTCACCCCTTCAGCTCGGATCAGCAACACTTGATGAATTTGTCAAACCAAGCTGTTATGGACAACAAATTACAACTCATTGATCTTCCACAGCTAGATAGTCCAACTGAAATCAAAGAATGTAACAACCCTAATAATGCCCTAACAAATGAGGAATATTGCAGTGATGAAATTGAAAGGAGCAATAACAGTACTGGACAAGGTGGCATTGATTGGAAGAGCTTGGACAACTTGTTTGGGTCACAATTGAGTGATGCAGCTTATTTTTCACATCCAAACTTGCCCTTGATGATGCCACATAACCATGAGCTACAACCTCAAAATCAAGCTAGTCATATCCTAGGATGCTTCCCTGCTGATTCATAA 1035 0.4145 MTLTQIPERSSSIDMESCVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIVEIDLYKMEPWDIQDRCKLGYEQQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVMSKNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQEEGWVVCRAFRKPSPSQRQGYEPWCSSSSSQQQHFFRDQSYARPLSIADILNETNVVQVLPSEGASFSHPFSSDQQHLMNLSNQAVMDNKLQLIDLPQLDSPTEIKECNNPNNALTNEEYCSDEIERSNNSTGQGGIDWKSLDNLFGSQLSDAAYFSHPNLPLMMPHNHELQPQNQASHILGCFPADS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02074 344 ProSiteProfiles NAC domain profile. 19 168 IPR003441 GO:0003677|GO:0006355
Cca02g02074 344 PANTHER NAC DOMAIN-CONTAINING PROTEIN 30 17 320 - -
Cca02g02074 344 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 17 320 - -
Cca02g02074 344 SUPERFAMILY NAC domain 13 168 IPR036093 GO:0003677|GO:0006355
Cca02g02074 344 Gene3D NAC domain 28 171 IPR036093 GO:0003677|GO:0006355
Cca02g02074 344 Pfam No apical meristem (NAM) protein 20 146 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02074 Cca-Chr2 40838262 40843438 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02074 15 341 NAC Transcription Factor Family AT1G71930 54.360 3.63e-114 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca02g02074 NAM 8.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02074 - - gmx:100811057 564.688