Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02067 ATGGATCCAAAAGGAAGCTTATGTGCTAACAACAGCACAAGGTCCTCTTCCTTAACCTCCCTTGTGAATGAATTACAAACAATTTTTCCCTCAGATCCTTCCTCTTTCTATGGGGTCAGGACTGAAACACCTTTCAAAGAATACAACCTACCCTCTCCTCCAACCCAATCTGTGCTTCCAGGTGAACCTAACAAAGATATTGAGATCCCTGACCAAGAAAATTGTCATCTGAGTGACTCATCACATACCAGTAAACTCCAAGATTGGAATCCAAGTGTGATGTTGAATAACCTTTCCTTCCTTGAAGAAAAGATTCATCAGCTCCGTGATCTAGTGCATTTAATTGTTAATAAAAAATGCCAACCTTTTGGACAGCCTCATGAACTAGTGACTCAGGAACAGCAGCTCGTCACAGCTGATCTTACATCGATTATTGTTCAATTGATCTCTACTGCTGGTAGTCTTCTCCCTTCTGTTAGGCACACCCTCACAAACACAAATCCCTTGGTTGGACAGCTTGACCAGCTTCATGGGATTAACCTCCCTTTTGGATCAGACACAGGTAGTGGTGTTAGGCCACAAAATAATAGTGGAACTAAACTGCTTGATCAGTCCACTCAGAATGATATACTTCCAAATAATTGTGAAATTGAACAAAACTACAACATGGAAGAACATGAACCAAAAGATGAAGAAGATATGGACGAGGGAGAGCATCTTCCTCCTGGTTCCTACGAGATTTTACAATTAGAAAAAGAAGAAATCCTTGCACCTCACACACATTTTTGTACCATGTGTGGGAAGGGATTCAAGAGGGATGCGAATCTGCAAATGCACATGCGAGGCCATGGTGACGAGTACAAAACTCCTGCAGCTCTTGCAAAACCACACAAAGAAACTGGGTCTGAACCAAAGCTCATCAAGAGGTATTCCTGCCCCTATGCTGGCTGCAAGCGCAACAAGGATCACAAGAAATTCCAACCACTGAAAACCATTTTGTGTGTTAAAAACCACTACAAAAGAACACACTGTGACAAGAGCTACACTTGCAGCAGATGCAACACCAAGAAGTTTTCAGTGATGGCAGACCTTAAAACTCATGAAAAACACTGTGGAAAGGATAAATGGCTCTGTTCGTGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTCGGACACATTGCCCTTTTCCAAGGCCATACACCAGCTATTCCTTTGGATGACACCAAAGGAGTGGCTGAGCCACCTGATCTCCAGAACAGAGAAAGCAACAATAAGGTTCCAAGTATGAACTTCTGTTTTGGATCAAATCCTTCGAGTGAAAATGTAGTGCAAAACACGATGGATGTGAAAGGTAATATTGATGATCCTATGAATTATTTCTCATCCTTGAACTTCGAAGGCTGTAACTTTGGTGGGTTTAATGAATTCTCCCAACCACCATTTGAAGATTCAGAAGGTTCTTTCTCTTTTCTCATGTCAGGATCCTTTAATTATGCCCCTAAATTTGGTGGCGGTGAATCAAGTTCTGAAAATCTGTTGTGA 1545 0.4168 MDPKGSLCANNSTRSSSLTSLVNELQTIFPSDPSSFYGVRTETPFKEYNLPSPPTQSVLPGEPNKDIEIPDQENCHLSDSSHTSKLQDWNPSVMLNNLSFLEEKIHQLRDLVHLIVNKKCQPFGQPHELVTQEQQLVTADLTSIIVQLISTAGSLLPSVRHTLTNTNPLVGQLDQLHGINLPFGSDTGSGVRPQNNSGTKLLDQSTQNDILPNNCEIEQNYNMEEHEPKDEEDMDEGEHLPPGSYEILQLEKEEILAPHTHFCTMCGKGFKRDANLQMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDTKGVAEPPDLQNRESNNKVPSMNFCFGSNPSSENVVQNTMDVKGNIDDPMNYFSSLNFEGCNFGGFNEFSQPPFEDSEGSFSFLMSGSFNYAPKFGGGESSSENLL 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02067 514 Gene3D Classic Zinc Finger 245 315 - -
Cca02g02067 514 ProSiteProfiles Zinc finger C2H2 type domain profile. 261 288 IPR013087 -
Cca02g02067 514 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 496 - -
Cca02g02067 514 SMART c2h2final6 310 343 IPR013087 -
Cca02g02067 514 SMART c2h2final6 261 283 IPR013087 -
Cca02g02067 514 SMART c2h2final6 348 370 IPR013087 -
Cca02g02067 514 MobiDBLite consensus disorder prediction 187 205 - -
Cca02g02067 514 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 496 IPR044300 GO:0010044|GO:0010447
Cca02g02067 514 MobiDBLite consensus disorder prediction 184 205 - -
Cca02g02067 514 SUPERFAMILY beta-beta-alpha zinc fingers 259 286 IPR036236 -
Cca02g02067 514 ProSitePatterns Zinc finger C2H2 type domain signature. 263 283 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02067 Cca-Chr2 40760025 40762760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02067 229 514 C2H2 Transcription Factor Family AT1G34370 67.918 1.08e-134 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca02g02067 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02067 - - gmx:100170687 941.799