Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02065 ATGGAAGATTCAGAGGAGGATGAGCTTTTGAACCTTAGCCTTTCAGTTGCTGCTgatagggaaaggaaaaagaagggaaaggtaattagggaaCACAAGAACGTTTCTATGAGTAGTGctactactactactactaGGACAAACTCCTATGAAAGCTACGAAGGGAAGATCTTTAGGCTTCTCCAAATGAGGGAGCAGATGCTAAGACAAGACCATAGGAGGAAAGGAGTGGTGGAAGATGGAAATGGCCTCCCTTTGATCCATTTGCTGCTCTCAACTGCCACTGCAGTTGATGACAACAACTTGGATTCATCCCTAGAGAATCTCACTGATTTATACCAAACAGTGTCCCTAACAGGTGACTCAGTTCAACGTGTTGTGGCACATTTTGCTGATGGTTTGGCTGCAAGGCTTCTCACAAGGAAATCACCATTCTATGACATGCTCATAGGGGAACCAACAACCGAGGAAGAGTTCCTTGCATTCACAGATCTCTACAGGGTTTCACCTTACTTCCAATTCGCTCATTTCACTGCAAACCAAGCCATCTTGGAGGCCTTTGAGAGAGAGGAAGAGAGGAACAACCGTGCTTTGCATGTCATCGACTTTGATGTCTCCTATGGCTTCCAATGGCCTTCTCTCATTCAATCTCTCTCAGAGAAGGCAACAAGTGGCAACCGCATATCCCTCAGGATAACCGGATTTGGCAAGAGCCTCAAAGAACTTCAAGAAACTGAGTCTAGGTTGGTTAGTTTCTCAAAGGGTTTCGGAAGCCTTGTGTTTGAGTTCCAAGGGTTGCTGAGAGGCTCAAGGGTCATCAACCTAAGGAAGAAAAAGAATGAGACTGTTGCTGTCAACTTGGTTTCTTACTTGAACACTTTGAGTTGTTTCATGAAGATCTCTGACACGTTGGGATTTGTTCATTCCCTTAACCCCTCCATTGTGGTGTTGGTGGAGCAAGAGGGTAGCAGGAGCACTCCTAGGAGCTTCTTGTCGAGGTTCACGGACTCCTTGCACTACTTTGCAGCCATGTTTGATTCTCTTGATGATTGTCTCCCTCTTGAGAGTGCTGAGAGGTTGAGAATTGAGAAGAAGCTTTTGGGGAAAGAGATCAAAAGCATGCTGAACAATGTTGACGTGGATGGTGTGGATTGTCCAAagtatgagaggatggagacgtggaaagtgagaatggagaatCATGGGTTTGTTGGCACCAAAATAAGCTCAAAGTCTATGATCCAAGCAAAACTTTTGCTGAAGATGAGGACACATTATTGTCCTCTCCAGTTTGAGGAAGAGGGAGGTGGGGGTTTCAGGGTTTCTGAAAGAGATGAAGGAAGGGCTATCTCTTTAGGGTGGCAAAATAGGTTTCTGCTTACTGTCTCAGCATGGCAACCAGTATGA 1407 0.4236 MEDSEEDELLNLSLSVAADRERKKKGKVIREHKNVSMSSATTTTTRTNSYESYEGKIFRLLQMREQMLRQDHRRKGVVEDGNGLPLIHLLLSTATAVDDNNLDSSLENLTDLYQTVSLTGDSVQRVVAHFADGLAARLLTRKSPFYDMLIGEPTTEEEFLAFTDLYRVSPYFQFAHFTANQAILEAFEREEERNNRALHVIDFDVSYGFQWPSLIQSLSEKATSGNRISLRITGFGKSLKELQETESRLVSFSKGFGSLVFEFQGLLRGSRVINLRKKKNETVAVNLVSYLNTLSCFMKISDTLGFVHSLNPSIVVLVEQEGSRSTPRSFLSRFTDSLHYFAAMFDSLDDCLPLESAERLRIEKKLLGKEIKSMLNNVDVDGVDCPKYERMETWKVRMENHGFVGTKISSKSMIQAKLLLKMRTHYCPLQFEEEGGGGFRVSERDEGRAISLGWQNRFLLTVSAWQPV 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02065 468 PANTHER OSJNBA0084A10.13 PROTEIN 8 466 - -
Cca02g02065 468 Coils Coil 357 377 - -
Cca02g02065 468 Pfam GRAS domain family 86 466 IPR005202 -
Cca02g02065 468 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 8 466 IPR005202 -
Cca02g02065 468 ProSiteProfiles GRAS family profile. 77 466 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02065 Cca-Chr2 40745488 40747195 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02065 39 467 GRAS Transcription Factor Family AT3G54220 34.018 1.77e-56 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca02g02065 GRAS 1.5e-89 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02065 - - gmx:100809458 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00937 08 22061582 22063397 Cca02g02065 02 40745488 40747195 PCT