Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02061 ATGTCTGGCAACTCAAAATGCAGTGTTTACATAGGCAATCTAGATGAGAGGGTGACAGACAGGGTCTTGTATGATATATTAATTCAAGCTGGACGAGTGGTAGACTTGCACATTCCTAAAGATAAGGAATCAGAGAAACCAAAAGGTTTTGCCTTCGCAGAATATGAAACAGAGGAGATTGCAGACTATGCTGTCCAGCTTTTCTCGGGCCTTGTAACACTCTACAACAGAACACTTAAGTTTGCGATATCTGGGAGAGACAAAAATAGCTCTAATGGTTCTACAGCAATTACCCCAACATCAAATTCTTCTCAAAAACCAAGGCCTTACCCAGTGCCAATAAATAATTCAGAAAATTTTCAGCACCATGCTAGGCTATCAACATCTGACCGATTTTCTGATTATGCAGCAAATTATTCTCAAGTTCCTCCTTCTCGTGTAACTGACCTACCTAGTGGGTATGGATCTCACTATAGTGGCAACAATTATGAATCCAGCAGGAGAGCATTGGGGGCACCATCAGATAGCATTAGCCGTTCTAGGATTGAAAAGTGGGTCACCTTTGTTGAAGCATTCCATTCAAGGAAGGTGTTGAAGAATAAAGAGACATACCCATATGCTTGCCTCCATAACAGGATTTGCCTACCAATGGATAAGAACTCCAACTCCTCCATGACTATGAATCTTTTACTTTAA 696 0.4095 MSGNSKCSVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEIADYAVQLFSGLVTLYNRTLKFAISGRDKNSSNGSTAITPTSNSSQKPRPYPVPINNSENFQHHARLSTSDRFSDYAANYSQVPPSRVTDLPSGYGSHYSGNNYESSRRALGAPSDSISRSRIEKWVTFVEAFHSRKVLKNKETYPYACLHNRICLPMDKNSNSSMTMNLLL 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02061 231 SUPERFAMILY RNA-binding domain, RBD 4 81 IPR035979 GO:0003676
Cca02g02061 231 Gene3D - 2 97 IPR012677 -
Cca02g02061 231 MobiDBLite consensus disorder prediction 87 117 - -
Cca02g02061 231 SMART rrm1_1 8 82 IPR000504 GO:0003723
Cca02g02061 231 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 186 - -
Cca02g02061 231 PANTHER OS01G0876500 PROTEIN 1 186 - -
Cca02g02061 231 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 80 IPR000504 GO:0003723
Cca02g02061 231 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02061 7 87 Eukaryotic Initiation Factors Gene Family AT1G49760 30.864 2.97e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02061 K12831 - gmx:100784532 324.709