Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02052 ATGGAGTACAAAGTGAAAACCACAACAACTTCTCCACCAATCCCAATCCATGTTCCCACCATGCTCTCAAACTCTCCCCCATCTTCATCTTCTTCACCTCCCTCACAATCTCACACACCTTTCCCTTCACCCTCTCAGGGCTctccccctgctgctcctccctctcctccgccgccCGTGGTGGTTAGCCCTTGCGCTGCTTGCAAGATCCTCCGCCGGAGGTGCGTGGAGAAGTGTGTCCTGGCTCCCTATTTCCCTCCCACTGATCCTATCAAGTTCACCATTGCTCACAGAGTCTTTGGAGCCAGCAACATCATCAAGTTCTTGCAGGAACTGCCAGAATCCCAGAGAGCAGATGCTGTGAGCAGCATGGTGTATGAGGCAAATGCTAGGATCAGAGACCCGGTTTATGGGTGTGCAGGTGCAATATGCCAACTTCAGAAGCAAGTTAGTGAGCTACAAGCACAGCTGGCGAAAGCTCAAGCTGAGGTAGTCAACATGCAGTGCCAACAAGCCAATTTAGTGGCGCTAATTTGCATGGAAATGAGCCAATCACAGGATCAAAACATGCTTCAGCCTCAACCCCACGTTGATATGAGCTGCTTCATAGAGGACAACACTTTCGGAACTGCTTGGGAGCCTCTTTGGACATGA 654 0.4755 MEYKVKTTTTSPPIPIHVPTMLSNSPPSSSSSPPSQSHTPFPSPSQGSPPAAPPSPPPPVVVSPCAACKILRRRCVEKCVLAPYFPPTDPIKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVALICMEMSQSQDQNMLQPQPHVDMSCFIEDNTFGTAWEPLWT 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02052 217 MobiDBLite consensus disorder prediction 1 56 - -
Cca02g02052 217 Coils Coil 143 170 - -
Cca02g02052 217 ProSiteProfiles LOB domain profile. 63 164 IPR004883 -
Cca02g02052 217 MobiDBLite consensus disorder prediction 1 36 - -
Cca02g02052 217 MobiDBLite consensus disorder prediction 37 56 - -
Cca02g02052 217 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1-LIKE 50 206 - -
Cca02g02052 217 Pfam Lateral organ boundaries (LOB) domain 64 161 IPR004883 -
Cca02g02052 217 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 50 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02052 Cca-Chr2 40606725 40608509 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02052 60 217 AS2 family AT1G07900 71.166 1.93e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca02g02052 LOB 2.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02052 - - gmx:100806667 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02052 02 40606725 40608509 Cca02g02052 02 40606725 40608509 ECH