Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02049 ATGAAGATAAAGGAACTTCACATGGGGAGGAAAGGGTGGTTTTCTGCAGTGAAGAAAGTTTTCATTTCTGATTCTAAAAAGGAACAGAAACATCATCATCATAATAGGTCAAACTCAGGCTTAAACTCAAAGTTTGCATGTTTTGGGGTTCATCATCATGAGGATCTAGAAAATGCACCTGAAAGACGACCAATTGCCGTTGTTCCCTCACTTCCGCCAAGAAAAGAGATCAAAGTAAGAAGTGAGACAGAGAGGGAGAATGAACAGAGCAACCAAGCCTTTTCTCTGGTTTTGGCCActgctgtggctgcaggggctgctgttgctgctgctgcAGAGGTTGCTCGTCTCTCAAACACGCCTCGTGCCAATGGAAAAATGAATCGAGAAGCAGCAGCTATCAAAATTCAAACAGCATACCGTGGATATTTGGCAAGAAGATCCTTGCGTGGGTTGAGAGGTTTGGCGAGGTTGAGATCATTGGTGCAAGGGCAATCTGTTCAACGGCAAGCGGCTAGTACCTTACAAAGCATGCAAACTCTTTCACGGTTGCAGTCTCAGATTCGTGCGCGGAAGATCAAAATGTCTGAGGAGAATCAAACTCTTCAACGGCAATTGCAGCAGAAACGGGAGAAGGAGTATGACAAGTTGCAATCTACTCAAATTGGTGAAAAATGGGATGATAGCATAAAATCAAAGGAGGAAGTTGAAGCAAAATTGGTGCAGAGACAAATAGCAGCTATGAGAAGAGAGAAGGCTTTGGCTTATGCATCAACACATCAGCAAACGTGGAAGAACTCTTCAAAATCTGCTGCAAATGCCACATTTATGGATCCAAACAATCCCCACTGGGGATGGAATTGGCTAGAGAGATGGATGGCTGCAAGGCCATGGGAGGGCCAAAACATTACATACCAAAATAGCCATGCATCTACCAAGGTTGCCTCAAGCAACAACATGTCAGTTGGTGAGATCACAAAGTTGTATTCTCTCCGTGATCAGAACCAAGATCTTAAAACCTCCCCAGCAAGCCAAAAACCAACCCGTCCTCCCAGCCACAATTCCCCTTCAACAACAGCTCCAAAGGCTCCACCATCCACCAATGGAACAAAGGCAAAGACACCATCAAGTCCAAAGGGTGGCTCATGGGGTGGTGATGGTGATTCACACAGCATGTTTAACAAGGTCTCAGAAAACAACCGTAGACACAGCATTGGTGTCTCTCCATTGAGAGATGATGAGAGCCATTCAAGCTCATCATGCCGCACAACACCATCATCATCCACAAAGATTGCAAAGCCAAAGCCATCATCCACCACCAAAGTGAGAAGTGCATCATTTGGTGTGCAAAGAAATGGAACAACACCTGAAAAACCAGCTTCTTCTGCTCCTCTCAAGAAGAGGCTTTCTTTCCCAGCTTCTTCTTCTATTTCAGCAGGCTCAAGAAGGCATTCTATTTCAACTAGGCCGGGAAATGTGGCTCCCAACAAGAATGTTGCTATTGCTACGATCCCCGAGGAGAAAGTGAAAGTGAAAAACGGAGGGAGCAGGTAG 1554 0.4395 MKIKELHMGRKGWFSAVKKVFISDSKKEQKHHHHNRSNSGLNSKFACFGVHHHEDLENAPERRPIAVVPSLPPRKEIKVRSETERENEQSNQAFSLVLATAVAAGAAVAAAAEVARLSNTPRANGKMNREAAAIKIQTAYRGYLARRSLRGLRGLARLRSLVQGQSVQRQAASTLQSMQTLSRLQSQIRARKIKMSEENQTLQRQLQQKREKEYDKLQSTQIGEKWDDSIKSKEEVEAKLVQRQIAAMRREKALAYASTHQQTWKNSSKSAANATFMDPNNPHWGWNWLERWMAARPWEGQNITYQNSHASTKVASSNNMSVGEITKLYSLRDQNQDLKTSPASQKPTRPPSHNSPSTTAPKAPPSTNGTKAKTPSSPKGGSWGGDGDSHSMFNKVSENNRRHSIGVSPLRDDESHSSSSCRTTPSSSTKIAKPKPSSTTKVRSASFGVQRNGTTPEKPASSAPLKKRLSFPASSSISAGSRRHSISTRPGNVAPNKNVAIATIPEEKVKVKNGGSR 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02049 517 MobiDBLite consensus disorder prediction 336 377 - -
Cca02g02049 517 MobiDBLite consensus disorder prediction 419 459 - -
Cca02g02049 517 SMART iq_5 128 150 IPR000048 GO:0005515
Cca02g02049 517 Coils Coil 192 212 - -
Cca02g02049 517 Pfam IQ calmodulin-binding motif 131 150 IPR000048 GO:0005515
Cca02g02049 517 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 10 508 - -
Cca02g02049 517 MobiDBLite consensus disorder prediction 468 494 - -
Cca02g02049 517 Coils Coil 231 251 - -
Cca02g02049 517 ProSiteProfiles IQ motif profile. 129 157 IPR000048 GO:0005515
Cca02g02049 517 PANTHER IQ-DOMAIN 5-RELATED 10 508 - -
Cca02g02049 517 MobiDBLite consensus disorder prediction 336 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02049 Cca-Chr2 40559554 40563578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02049 8 477 IQD Protein Family AT5G03040 41.372 1.73e-88 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02049 - - gmx:100807725 640.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02049 02 40559554 40563578 Cca02g02049 02 40559554 40563578 ECH