Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02041 ATGCCGAATAAGATTCGACACATCAGCCCTAATATTCAAAACTCACGCGCTTCAACCAGGACGTGTAACACTGCCATCTTCATTTTTGTCCTTTATGCTTTGACTCTCTCTGCCCAAGCGGCGGGAAGGGAAAACGAGACGTTGAGATCCGGTTTTCCACCAGCCAAGGAACGGATAGAAAAACTTTCAGAGGCACCGAGGAGGGAGAAGACACAGACAGACTCACACACTCTCAGCTCCACAGACTCACGAATCTCGCTTCCATGGCCTCACTCTTCCCTCTCAATCGCCGCCCTCTCCTCTGAACTCATTTCCTCTCGCCGCTACCTTCTCTCCTCCCCGCCGCCCTCGCCGGAGCTCCGCCCGAGCCCTAGGCTGCCGCGATTCGCCTGCCGTCTGCGCTTTCTTCTTCGATCTGTGGCCGTTTTGTTTTCTGTGGCTGCCCATGCTATTGGGTTGGTTTTGATGCCGCCGGAACCATTGCCTTGGGATCGAAAGGACTTCTTCAAGGAGAGGAAGCACGAGCGGTCGGAGTCGCTAGGGTCCGTCGCCAGATGGAGGGACTCGTCGCACCACCGCGACTTCAACCGCTGGGGATCCGCCGAGTTCCGCCGCCCGCCAGGTCATGGTAAGCAGGGTGGTTGGCACCTGTTTTCCGAGGAATCTGCTCACGGGTATGGGATTTCTCGGTCCAGCAGTGACAAGATACTGGAGGAAGACAGTCGGCCGTCGATTTCACGGGGCGATGGGAAGTATGGCAGGAGCAGTCGGGACAACAGAGGACCCTTTGGCCAGAGAGATTGGAGAGGGCATTCGTGGGAGCCCAACAATGGTTCTCTAAGTTTTCCCAGAAGGCCGCCGGATGCGAACAACGACACGAGGGCTGTAGATGATGCCCTAGCATATTCCTCCCATCCGCACTCTGATTTCGGGAACGCGTGGGATCAGCACCACATGAAAGACCAGCATGATAAGATGGGTGGTGCCAATGGGTTGGGAGCAGGTCCCAGATGTGATAGGGAGAACTCTCTTGGAGACTGGAAGCCACTTAAATGGACCCGATCTGGGAGCTTGTCCTCTCGCGGCTCAGGGTTTAGCCACTCCAGTAGCTCAAGGAGCATGGGAGGAGCAGATTCCCATGAAATGAAGGCTGAGTTTCAACCCAAGAGTGCTGCAGCTAATGAGTCACATTCAGGGGAAGCTGCTGCATGTGCAACATCATCTTTGCCTTCTGAAGATGCCACTTCTAGAAAAAAGCCCAGGCTGAATTGGGGTGAGGGACTTGCAAAGTATGAGAAAAAGAAAGTTGAGGTGCCTGATACAAATGCAAACAAAGATGGTCCTGTCTTGTCTGCTGGTAACACAGAACCGTGTAATTTCCTCAGTCCCAGCTTGGTAGAAAAAAGCCCCAAAGTTGCTGGATTTTCTGAATGTGCATCTCCTGCAACTCCATCTTCTGTTGCCTGCAGTTCCTCACCTGCAGGTATGGATGATAAATTATTTGGAAAGACTGCAAATGTGGACAATGATGTTAGTAATTTGACTCTTTCACCTGCTCCTGTGTCTGAAAATCATCTGCAGAGGTTTTCTTTTAACTTAGAGAAATTTGATATTGGCTCCTTAAATAATTTGGGTTCTTCAATTATTGAGTTGGTACAATCTGATGATCCAACTTCTGTGGATTCTGGTCCAATGAGGTCCAATGCAATTAATAAGTTGCTGATATGGAAAGCTGACATTTCAAAGGTGTTGGAGATGACTGAATCTGAAATAGATTTACTTGAAAATGAATTGAAGTCGCTAAAATCTAAATCTGTGAATACATGTCCATGTCCAGTAGCCTTGGGCTCCCAGATGGTAGGTAGTGATGAAAAATCCTCTGAAGAGCATGTTGGAGTCTCTGATCAGGTCATCCGACCAGTACCGTTGAAAATTGTTGATGATCCCAATGTGAAGATGCCTCTTTCAACTAATTTACATAGTATTCATGAAAATTGCAAGGAAGAGGATATTGATAGTCCTGGAACAGCAACTTCAAAATTTGTTGAGCCTCTGCCTTTAATTAATGCAGTTTCTTGCGATACCGGTGGATATGATAATTTCTCCAGGGACTTGGATGCTGTTCAGCCCACAGCTGTGAAAGGCCTAGTTCCCTGTACTACTAGGAAAGCTGCTACTGTATCTGCTTGTGTTGATGGCAATACCTGCATGGAGCAAAAGGATAGCATGGATGTTTTATATAATACAATTATTTCTTCGAATAAAGAATCTGCTAACAGAGCTAGTGAGGTATTTGCTAAGTTATTGCCCAATGATTGTTGCAAGATTGGGAAGATGGGAGCCAGCAGTGACCCATGTACTCATACATTCATTATGGAAAAATTTGCTGAGAAAAAGCGATTTGCAAGATTTAAGGAGAGAGTTATTGCACTTAAGTTCAGAGCCTTGCATCACCTGTGGAAAGAGGATATGCGTTTGCTGTCCATTAAGAAATGCCGACCAAAATCTCACAAAAAAAATGAACTTAGTGTGCGAACTACCTGTAATGGTAGCCAGAAGAATCGATCTTCCCTTCGATCTCGTTTTCCCTTTCCTGCAGGAAATCAATTAAGCTTGGTTCCAACATCAGAGATAATTAGTTTCACTAGCAAACTGCTTTCAGAGTCCCAAGTTAAAGTGCAGAGAAGCACCCTGAAGATGCCATCATTAATTTTGGATGAAAAAGAGAAGATCACTTCAAAGTTTGTAACTAGTAATGGGCTGGTTGAAGATCCATTGGCTATTGAGAAAGAAAGGACTATGATTAATCCTTGGACATCAGAAGAGAGAGAAGTTTTCTTGGAGAAATTTGCTGCATTTGGAAAAGATTTTCGGAAAATTGCTTCTTTTCTCGACCACAAGACAACTGCTGACTGTGTTGAATTCTACTACAAGAATCATAAATCTGATTGTTTTGAGAAACTTAAGAAGCAAAATGTTGATAAGCTAGGGAAATCGTTTTCAGCTAAAACTGACATGGTGGCATCAGGTAATAAAAAAATGCGTGCAGGAAGCACTCTTTTGGGTGGATATGGTAAAGTAAAGGCATCAAGGGGTGAAGACTTCATAGAGAAATCAAGCAGTTTTGACATTCTTGGGGATGAAAGAGAGACTGCTGCTGCAGCTGATGTATTGGCTGGTATATGTGGTTCTCTTTCATCTGAGGCTATGAGTTCCTGCATAACAAGTTCAGTTGATCCCGTAGAAGGTAACAGGGATAGGAAGTTTTTGAAAGTGAGCCCTTTATGCAAACCGCCTATGACACCTGATGTTACTCAGGATATTGATGATGAGACTTGTTCAGATGAGAGCTGTGGTGAAATGGATCCTATAGATTGGACTGATGATGAGAAAGCTGCTTTTCTTCAGGCTGTATCATCTTTTGGGAAGGATTTTGCAAAGATAGCACGTTGTGTTAGGACAAGGTCTGAGGAACAGTGCAAAGTTTTCTTCAGCAAGGGTCGGAAATGCCTTGGCTTAGATCTCATGCGCCCAATACCCGAGAATGTTGGATCCCCGGTGAATGATGATGCAAATGGGGGTGAGAGTGACACAGATGATGCATGTGTTGTTGAGACAGGCTCAGCAGTTGGAACTGATAAGTCTGGTACTAAAACAGACGAGGACCTGCCTTTGTATGGCATGAATACTTACGTTGATGAATCCAATCCTGTTGAAGCTAGGAACCTGTCAACTGAATTGCATGAATCAAAGGAAACTAATGGGACAGAAGTAGATCTTGAAGATGCAAATGTAGTTTTGGATGTTTGTGCAATTAATAGTGAATCTGAACGGGACAGTAGACAAGCAACTATAATTATGTCAGATAGCACAGAAGTTGGAAAAGATAAAGCAAATAAATTGGGGGGTGAAGCTTCAGAATTGATATCTGCTCCAGATGTAAGTGAACCATGCGAGAGTAATTCTGTTGCCGAGGATAGAGTGGTGATTTCAGAGGTTTCTTCTGGTGGTCTTGGAAATGAATTGGAGAGGCAAAGAGTGTCTTCACCCTCATGTCTTGATAGAGATAATAAACATGAAGCTGATTCAGGTGTCATGGCTGATTTAAAAGGCTCTGTGCAAGATTTAAGTCCTATGGTAAATGCTTCATTCCCATCTTTGGGCAATTCTTGTTCAGGATTGAGTTTTAGTCCTGAAAATAAGCATGTGCCCCTTGGAAAGCCTCTTGTCTCCGCATTGACCATTGAGGATCTTCGTGCAACTTCAAATTCATTGTTGCAAAATAATGTTGCTGCTGATGTTCAATGCGAAAAAACAGCTAGTCAAGATCGACTGTCCTCTACTTGTGATATTCAAGGAAGTAGAGATGTGCACTGCCAGAATTCCGTTAGTAATGGTGATCATCAGCTCCCTATTACTGGGAATTCATCAGACCATATTGATGCTGTTAGCATCCTTCAGGGCTATCCCTTGCAAGTTCCCATTAAGAAAGAAATGAATGGTGATATGAATTCCAGCAGTTCAGGAACAGAATTGCCTCTTCTGTCACAAAAGATTGAACAGGTCGATGGTCATACCAAAACACTGCAGTCATCAGATTCAGATAAAACATCCCGAAATGGTGATGTGAAACTGTTCGGGAAGATACTAACCAATTCATCATCCGCACAGAAACCTAGTGTGGGTGCTAAAGGAAGTGAAGAAAATGGTACCCATCATCCTAAGTTAAGCAGCAAATCGTCTGGTCTGAAATTTACTGGCCACCATAGTGCAGATGGGAATTTGAAAATTTTGAAATTCGACCGTAGTGATTATGTTGGCCTTGAAAATGTTCCCATGAGGAGTTATGGTTATTGGGATGGAAACAGAATACAGACTGGTCTCTCGTCATTGCCCGATTCTGCCATCTTGCTAGCAAAGTATCCAGCTGCCTTCAGTAATTATCCCACATCTTCTGCCAAATTGGAGCAGCAACCATCACTGCAGGCATTTTCGAAGAATAATGAACGGCTCCTGAATGGTGCATCCACTTTTACGACTAGAGAAGTGAATGGCAGCAATGCCGTGATTGATTATCAGATGTATAGAAGGGATGGTCCAAAAGTGCAGCCATTTATGGTAGACGTGAAGCACTGTCAAGATGTGTTCTCAGAGATGCAGAGAAGAAATGGTTTTGAAGCAATATCAAGTTTACAGCAGCAGGGCAGGGGGATGATGGGAATGAATGGTGTGGGAAGACCGGGGATTGTTGTAGGAGGGTCATGCAGTGGTGTCTCGGATCCTGTGGCAGCAATCAAAATGCATTATTCCAATTCTGGTGGTCAGACTGGGAGTATTGCAAGAGAGGATGAATCTTGGGGAGGGAAAGGGGACTAA 5376 0.4459 MPNKIRHISPNIQNSRASTRTCNTAIFIFVLYALTLSAQAAGRENETLRSGFPPAKERIEKLSEAPRREKTQTDSHTLSSTDSRISLPWPHSSLSIAALSSELISSRRYLLSSPPPSPELRPSPRLPRFACRLRFLLRSVAVLFSVAAHAIGLVLMPPEPLPWDRKDFFKERKHERSESLGSVARWRDSSHHRDFNRWGSAEFRRPPGHGKQGGWHLFSEESAHGYGISRSSSDKILEEDSRPSISRGDGKYGRSSRDNRGPFGQRDWRGHSWEPNNGSLSFPRRPPDANNDTRAVDDALAYSSHPHSDFGNAWDQHHMKDQHDKMGGANGLGAGPRCDRENSLGDWKPLKWTRSGSLSSRGSGFSHSSSSRSMGGADSHEMKAEFQPKSAAANESHSGEAAACATSSLPSEDATSRKKPRLNWGEGLAKYEKKKVEVPDTNANKDGPVLSAGNTEPCNFLSPSLVEKSPKVAGFSECASPATPSSVACSSSPAGMDDKLFGKTANVDNDVSNLTLSPAPVSENHLQRFSFNLEKFDIGSLNNLGSSIIELVQSDDPTSVDSGPMRSNAINKLLIWKADISKVLEMTESEIDLLENELKSLKSKSVNTCPCPVALGSQMVGSDEKSSEEHVGVSDQVIRPVPLKIVDDPNVKMPLSTNLHSIHENCKEEDIDSPGTATSKFVEPLPLINAVSCDTGGYDNFSRDLDAVQPTAVKGLVPCTTRKAATVSACVDGNTCMEQKDSMDVLYNTIISSNKESANRASEVFAKLLPNDCCKIGKMGASSDPCTHTFIMEKFAEKKRFARFKERVIALKFRALHHLWKEDMRLLSIKKCRPKSHKKNELSVRTTCNGSQKNRSSLRSRFPFPAGNQLSLVPTSEIISFTSKLLSESQVKVQRSTLKMPSLILDEKEKITSKFVTSNGLVEDPLAIEKERTMINPWTSEEREVFLEKFAAFGKDFRKIASFLDHKTTADCVEFYYKNHKSDCFEKLKKQNVDKLGKSFSAKTDMVASGNKKMRAGSTLLGGYGKVKASRGEDFIEKSSSFDILGDERETAAAADVLAGICGSLSSEAMSSCITSSVDPVEGNRDRKFLKVSPLCKPPMTPDVTQDIDDETCSDESCGEMDPIDWTDDEKAAFLQAVSSFGKDFAKIARCVRTRSEEQCKVFFSKGRKCLGLDLMRPIPENVGSPVNDDANGGESDTDDACVVETGSAVGTDKSGTKTDEDLPLYGMNTYVDESNPVEARNLSTELHESKETNGTEVDLEDANVVLDVCAINSESERDSRQATIIMSDSTEVGKDKANKLGGEASELISAPDVSEPCESNSVAEDRVVISEVSSGGLGNELERQRVSSPSCLDRDNKHEADSGVMADLKGSVQDLSPMVNASFPSLGNSCSGLSFSPENKHVPLGKPLVSALTIEDLRATSNSLLQNNVAADVQCEKTASQDRLSSTCDIQGSRDVHCQNSVSNGDHQLPITGNSSDHIDAVSILQGYPLQVPIKKEMNGDMNSSSSGTELPLLSQKIEQVDGHTKTLQSSDSDKTSRNGDVKLFGKILTNSSSAQKPSVGAKGSEENGTHHPKLSSKSSGLKFTGHHSADGNLKILKFDRSDYVGLENVPMRSYGYWDGNRIQTGLSSLPDSAILLAKYPAAFSNYPTSSAKLEQQPSLQAFSKNNERLLNGASTFTTREVNGSNAVIDYQMYRRDGPKVQPFMVDVKHCQDVFSEMQRRNGFEAISSLQQQGRGMMGMNGVGRPGIVVGGSCSGVSDPVAAIKMHYSNSGGQTGSIAREDESWGGKGD 1791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02041 1791 ProSiteProfiles SANT domain profile. 1125 1164 IPR017884 -
Cca02g02041 1791 Gene3D - 914 986 - -
Cca02g02041 1791 CDD SANT 1126 1164 IPR001005 -
Cca02g02041 1791 SUPERFAMILY Homeodomain-like 1126 1172 IPR009057 -
Cca02g02041 1791 MobiDBLite consensus disorder prediction 44 83 - -
Cca02g02041 1791 MobiDBLite consensus disorder prediction 50 75 - -
Cca02g02041 1791 MobiDBLite consensus disorder prediction 353 376 - -
Cca02g02041 1791 Pfam Myb-like DNA-binding domain 1126 1164 IPR001005 -
Cca02g02041 1791 ProSiteProfiles SANT domain profile. 933 984 IPR017884 -
Cca02g02041 1791 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 156 1770 - -
Cca02g02041 1791 MobiDBLite consensus disorder prediction 1554 1585 - -
Cca02g02041 1791 MobiDBLite consensus disorder prediction 272 286 - -
Cca02g02041 1791 MobiDBLite consensus disorder prediction 226 293 - -
Cca02g02041 1791 SUPERFAMILY Homeodomain-like 921 981 IPR009057 -
Cca02g02041 1791 Coils Coil 577 604 - -
Cca02g02041 1791 MobiDBLite consensus disorder prediction 321 421 - -
Cca02g02041 1791 SMART sant 1122 1170 IPR001005 -
Cca02g02041 1791 SMART sant 934 982 IPR001005 -
Cca02g02041 1791 MobiDBLite consensus disorder prediction 1771 1791 - -
Cca02g02041 1791 MobiDBLite consensus disorder prediction 233 267 - -
Cca02g02041 1791 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 156 1770 - -
Cca02g02041 1791 Gene3D - 1100 1177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02041 Cca-Chr2 40475966 40491278 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca02g02041 Myb_DNA-binding 5.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02041 - - gmx:100810588 2801.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02041 02 40475966 40491278 Cca02g02041 02 40475966 40491278 ECH