Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02029 ATGGCGAAAGACGTTGAGGTTACTGAGCGTGGCTCCTTCTCTGGCAAGGACTACCATGACCCTCCACCAGCACCCCTCATTGATGCTGAGGAGCTCACAAAGTGGTCATTCTACAGGGCTCTCATTGCTGAGTTCATTGCCACTTTGCTTTTCCTCTACATCACTGTGCTCACAGTGATAGGGTACAAGCACCAGAGTGACCTCAAGGCTGGTGGTGATCTTTGTGGTGGGGTTGGCATTCTTGGCATTGCATGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACTGCTGGGATTTCAGGGGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTCTTGGCTCGCAAGGTGTCGTTGATCCGAGCTATTATGTACATGGTGGCTCAGTGCTTGGGGGCTATCTGTGGAGTTGGGTTGGTCAAGGCCTTCCAAAAGTCATACTTCAACAAGTATGGTGGTGGGGCTAATTCCCTCGCTGATGGCTACAACAAAGGCACTGGATTGGGTGCTGAGATCATTGGCACCTTTGTTTTGGTCTACACTGTCTTCTCTGCCACTGATCCCAAGAGGAATGCTAGAGATTCCCATGTGCCAGTACGTTTTCAATCATTTTTCTCACTATTAGTTTCTGTTTCTGATTCTGTGCCCTTGTTTTAG 666 0.491 MAKDVEVTERGSFSGKDYHDPPPAPLIDAEELTKWSFYRALIAEFIATLLFLYITVLTVIGYKHQSDLKAGGDLCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAIMYMVAQCLGAICGVGLVKAFQKSYFNKYGGGANSLADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVRFQSFFSLLVSVSDSVPLF 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02029 221 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 202 IPR034294 -
Cca02g02029 221 PANTHER AQUAPORIN PIP2-4-RELATED 1 202 - -
Cca02g02029 221 Pfam Major intrinsic protein 31 203 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g02029 221 Gene3D Glycerol uptake facilitator protein. 24 216 IPR023271 -
Cca02g02029 221 SUPERFAMILY Aquaporin-like 31 202 IPR023271 -
Cca02g02029 221 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g02029 221 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g02029 221 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g02029 221 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g02029 221 ProSitePatterns MIP family signature. 105 113 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02029 Cca-Chr2 40243563 40247311 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02029 1 202 Major Intrinsic Protein MIP AT2G37170 85.644 4.44e-124 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02029 K09872 - gmx:100817292 385.571