Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02027 ATGCGGTCAATTCCTCTGGGAACCTCACTATCTCCTACTCCTATTAACACCTCAAAACTATCACCTTTCAATTTTAATTTTAAGAAACCAAGCAATTTCCCATCTTGGGGTTCAACTCCTCATGAATTCTCTCTCTTCCAATCAGGATTATGCAGAGCGAGTCAAGTTGTTGATTTGTTTCCAACTGTGTCTCCTGAAATCATTGTCCGGGAGGCCAGGTTAGAGGACTGTTGGGAAGTGGCAGAGACTCACTGCAGTTCCTTCTTCCCTGACTATTCGTTCCCATTAGATTTTGTGTTGAGGATGGATAGATTGGTGGCGATGTTTGCTGGATTCTCTTTACCAAACGGTTGCAAGAGAACCTGTTTGGTGGCTGTTATTGGCAATCCACTTTGTGATGCTTTCTTATTTGGAAGTGAAGATTTCAAGGTTGGAGGTTTTGATGGGAAAATCAGCCTCAACAAGGGATATGTGGCTGGTATATTAACAGTAGATACTGTTGCAGACTTTCTACCTAGGAAGGGGCCATTGCGACAGAGAAGGACTGGAATTGCATACATATCAAATGTGGCAGTCCGGGAAAAATTTAGGCGGAAGGGAATAGCTAAACAGTTGGTAGCAAAGGCAGAATCACAAGCCAGAAGTTGGGGCTGTCGTGCTATTGCATTACACTGTGATTTAAAAAATCCTGCGGCCACAAAGTTATACCAAGGCCAAGGTTTCAGGAGTATTAAGGTTCCAGAAGGAGCTAACTGGCCACAACCGAAGACCTCACCGGATATAAATTTCAATTTCATGATGAAGCTTCTCAACAACACAGCTACTTCTAAATCAAATTAG 840 0.4286 MRSIPLGTSLSPTPINTSKLSPFNFNFKKPSNFPSWGSTPHEFSLFQSGLCRASQVVDLFPTVSPEIIVREARLEDCWEVAETHCSSFFPDYSFPLDFVLRMDRLVAMFAGFSLPNGCKRTCLVAVIGNPLCDAFLFGSEDFKVGGFDGKISLNKGYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKQLVAKAESQARSWGCRAIALHCDLKNPAATKLYQGQGFRSIKVPEGANWPQPKTSPDINFNFMMKLLNNTATSKSN 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02027 279 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 66 248 IPR016181 -
Cca02g02027 279 Pfam Acetyltransferase (GNAT) family 158 241 IPR000182 GO:0016407
Cca02g02027 279 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 1 274 - -
Cca02g02027 279 Gene3D - 63 246 - -
Cca02g02027 279 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 67 272 IPR000182 GO:0016407
Cca02g02027 279 CDD NAT_SF 183 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02027 Cca-Chr2 40186202 40189650 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Cca02g02027 Acetyltransf_1 2.5e-14 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02027 - - gmx:100305894 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02027 02 40186202 40189650 Cca02g02027 02 40186202 40189650 ECH
Cca08g00953 08 22624679 22628255 Cca02g02027 02 40186202 40189650 PCT