Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02025 ATGTTTGTGGTTATGGAGAGGGGCTCAGAAAGGTGCTTAGATTCTCAACTATGGCATGCCTGTGCTGGTGCCATGGTTCAAATGCCACCTCTCAACACCAAAGTCTTCTACTTTCCCCAGGGGCACGCAGAACACGCTCGTGGGAAAGTAGATTTCGGCCAAACCCGGATTCCACCATTCATCCCTTGCAGACTCTCTGCCATGAAATACATGGCAGACCCTGACACAGACGAGGTGTATGTCAAAATGAGGTTGACCCCTTTGAGGGAGCATGAATTGGATTTGGAAGACTGTTCTTTCTTGGGGAACAGTGGAGTAGAGGGTCAAGAGAAGCCTCCCACTTCTTTTGCCAAGACACTCACACAATCTGATGCCAACAATGGTGGAGGCTTTTCTGTGCCTCGTTACTGCGCTGAGACCATCTTTCCAAGGTTGGACTATTCGGCTGAGCCTCCGGTTCAGACCATCATTGCCAAGGATATGCATGGACAGTGCTGGAAGTTTAGGCACATCTATAGAGGGACACCCAGGAGGCATCTTTTGACCACTGGATGGAGCAATTTTGTGAACCAGAAGAGGCTTGTTGCTGGGGACTCTATTGTGTTTCTGAGGGCAGAAAATGGGGATCTTTGTGTTGGGATAAGGAGGGCTAAGAAGGGGATTGGTGGAGGGGCTGAGTTCTCTTCTGGGTGGAACCCTCTCTTTGGTGGGGGTTCTGGATTCTTGAGTGGTGCAAAAGGTGGTGGTGATGAGATGGTGGGAAGAGTGGCTGCTGAGTCTGTTCTTGAGGCTGTTACTTGTGCTGTTAATGGAAGGCCTTTTGAGGTTGTGTACTATCCAAGGGCTAGCTCCCCAGAGTTTTGTGTTAAGGCTTCTGTTGTGAAGGCTGCAATGCAAATTCAGTGGTGTTCTGGGATGAGATTCAAAATGCCCTTTGAGACCGAGGATTCTTCTAGGATCAGTTGGTTCATGGGAACCATTTCTTCTGTTCAGGTTGCAGATCCCATCCGTTGGCCTGATTCTCCTTGGCGCCTTCTGCAGGTGGTGTGGGATGAGCCAGATTTACTTCAAAATGTCAAGTGTGTAAACCCTTGGTTGGTGGAACTAGTCTCAAACATGCCAACCTTCAATCTCTCTGCATACTCACCTCCTAGAAAGAAACAACGCTTTATACAAGATCCATATTTTCAAGTCATCAACCAACTCCCAATGCCATCATTCTCTGGCAATCTTCTCAATTATACAAACTCTCTATGTAACATTGAAAATAATAGTTCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGACTATCTCCATCTGATTTTCCCTTCAACAAGCTCCAAGCAGACATGCTTCTAGGTGGATTCTCAAGGCTTGATCATGCAGCACAACCTATTAGGCCTCCTTGTGGAACCTATAAGAGCAACCCTGCTACTAAGGCCAATGTTGACATATCTTGCTTGTTGACTGTGGGAACTCCTGGCCAGAATTACAAGGAATCCAATGAAACAAAAGCACCCCACATCTTGTTATTTGGGAAACTCATTCACACTGAGCAAAAGAGTTCTAACACTAGCTCGGCTAGTACTGCTGGGAATAGTGTGTCTGAGGGGAATTCACTAAAGACATCAAATGCTTCTGATGGCATTGGTTCTGCTTTGCACCAAAGTAGTCCAATTGAGAATAATTCTGATGGAGGGTCTCCCTGGTACAAGGATCAACACAAGTCTGATCTGGAAACCGAAACTGTCAACACATTGTGTATGGCTTTATAA 1782 0.4669 MFVVMERGSERCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHARGKVDFGQTRIPPFIPCRLSAMKYMADPDTDEVYVKMRLTPLREHELDLEDCSFLGNSGVEGQEKPPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKRLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGAEFSSGWNPLFGGGSGFLSGAKGGGDEMVGRVAAESVLEAVTCAVNGRPFEVVYYPRASSPEFCVKASVVKAAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNMPTFNLSAYSPPRKKQRFIQDPYFQVINQLPMPSFSGNLLNYTNSLCNIENNSSAGIQGARHAQFGLSPSDFPFNKLQADMLLGGFSRLDHAAQPIRPPCGTYKSNPATKANVDISCLLTVGTPGQNYKESNETKAPHILLFGKLIHTEQKSSNTSSASTAGNSVSEGNSLKTSNASDGIGSALHQSSPIENNSDGGSPWYKDQHKSDLETETVNTLCMAL 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02025 593 ProSiteProfiles B3 DNA-binding domain profile. 116 218 IPR003340 GO:0003677
Cca02g02025 593 CDD B3_DNA 115 216 IPR003340 GO:0003677
Cca02g02025 593 Pfam B3 DNA binding domain 116 217 IPR003340 GO:0003677
Cca02g02025 593 SUPERFAMILY DNA-binding pseudobarrel domain 102 217 IPR015300 -
Cca02g02025 593 PANTHER AUXIN RESPONSE FACTOR 16 6 563 - -
Cca02g02025 593 MobiDBLite consensus disorder prediction 524 572 - -
Cca02g02025 593 SMART B3_2 116 218 IPR003340 GO:0003677
Cca02g02025 593 Gene3D - 302 375 - -
Cca02g02025 593 MobiDBLite consensus disorder prediction 524 586 - -
Cca02g02025 593 Pfam Auxin response factor 264 347 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cca02g02025 593 Gene3D - 114 218 IPR015300 -
Cca02g02025 593 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 563 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02025 Cca-Chr2 40167503 40170847 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02025 5 583 B3 DNA Binding Superfamily AT4G30080 57.119 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Cca02g02025 B3 2.5e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02025 - - gmx:100803053 1069.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00830 02 23157769 23161881 Cca02g02025 02 40167503 40170847 ECH
Cca03g02374 03 44732480 44736520 Cca02g02025 02 40167503 40170847 ECH
Cca02g02025 02 40167503 40170847 Cca02g02025 02 40167503 40170847 ECH