Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02024 ATGGTTGGACCAAACTTCATGGACGAAATAGACTGCGGAAGCTTCTTTGACCACATCGACGACCTTCTCGACTTTCCCGTCGAGGAcgtcgacgccgccgccgccaccctgccgcctgtggccgccggtgccgGGAACTGCAACTCGCTGGCGAGCATCTGGCCCGCCCAGTCCGACTCGGTGTTCTCCGGCAACAGCGCTTCGGACCTCTCGGCGGAGCTCTCCGTTCCGTATGAAGACATTGTTCAATTGGAATGGCTATCCAACTTTGTGGAGGACTCCTTCTGTGGGGGGAGCCTGACCATGAAGAAAGTGGAGGAGCCATCATCATGCACCACCAAGGAGGACTCAGTGCACAACCAATTCAACACCTCAAGCCCAGTTTCTGTCCTTGAGAGCAGCAGTACCTGCAGCGGCGGCAAGACTGTGCCACCGCCGGAGATTTACATCCCAGTGCCATGTGGACGTGCACGCAGCAAGCGTCCACGTCCTGCAACCTTCAATCCTAGGCCAGCCATGAACCTCATTTCCCCTGCCTCCTCTGTTGTTGGGGAGAACATGCAGCCTAATGTCATATCCCCCAAGGCCTCTTCAGACTCTGAGAATTTTGCCGAGTCTCAGCTTGTCCCCAAGATACCAAAGCAAGCCTCTGGGGAGCCAAAGAAGAAAAAGAAAGTGAAGTTGCCACTTCCTGTAGGTCCAGCTGATAGCAATTCCAATCAGAATGGTTCGCAACCAGTTAGAAAATGCATGCATTGTGAGATCACCAAGACACCACAGTGGAGGGCAGGTCCAATGGGGCCAAAAACACTATGCAATGCATGTGGTGTTCGTTACAAGTCTGGTAGGCTCTACCCTGAATACAGGCCTGCTGCAAGCCCAACTTTTTGCCCTTCCTTGCACTCCAATTCCCATAAAAAGGTGCTGGAAATGAGATGCAGAGGCATTGACAAATCCGGTTATGCAATGAATTCAGCTGCCTCACCTGAACTCATTCCAAACACTAACAGCAGCCTTACCCTGGAGTACATGTGA 1035 0.4957 MVGPNFMDEIDCGSFFDHIDDLLDFPVEDVDAAAATLPPVAAGAGNCNSLASIWPAQSDSVFSGNSASDLSAELSVPYEDIVQLEWLSNFVEDSFCGGSLTMKKVEEPSSCTTKEDSVHNQFNTSSPVSVLESSSTCSGGKTVPPPEIYIPVPCGRARSKRPRPATFNPRPAMNLISPASSVVGENMQPNVISPKASSDSENFAESQLVPKIPKQASGEPKKKKKVKLPLPVGPADSNSNQNGSQPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLYPEYRPAASPTFCPSLHSNSHKKVLEMRCRGIDKSGYAMNSAASPELIPNTNSSLTLEYM 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02024 344 PIRSF Txn_fac_GATA_plant 3 338 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cca02g02024 344 MobiDBLite consensus disorder prediction 189 205 - -
Cca02g02024 344 MobiDBLite consensus disorder prediction 152 173 - -
Cca02g02024 344 ProSiteProfiles GATA-type zinc finger domain profile. 244 280 IPR000679 GO:0006355|GO:0043565
Cca02g02024 344 SMART GATA_3 244 294 IPR000679 GO:0006355|GO:0043565
Cca02g02024 344 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 248 307 - -
Cca02g02024 344 MobiDBLite consensus disorder prediction 114 139 - -
Cca02g02024 344 CDD ZnF_GATA 249 296 IPR000679 GO:0006355|GO:0043565
Cca02g02024 344 Gene3D - 244 294 IPR013088 GO:0006355|GO:0008270
Cca02g02024 344 MobiDBLite consensus disorder prediction 189 246 - -
Cca02g02024 344 ProSitePatterns GATA-type zinc finger domain. 250 275 IPR000679 GO:0006355|GO:0043565
Cca02g02024 344 PANTHER GATA TRANSCRIPTION FACTOR 8 1 344 - -
Cca02g02024 344 MobiDBLite consensus disorder prediction 112 139 - -
Cca02g02024 344 Pfam GATA zinc finger 250 283 IPR000679 GO:0006355|GO:0043565
Cca02g02024 344 PANTHER GATA TRANSCRIPTION FACTOR 1 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02024 Cca-Chr2 40141182 40144348 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02024 19 312 C2C2-Gata Transcription Factor Family AT4G32890 37.086 2.39e-46 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Cca02g02024 GATA 1.2e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02024 - - gmx:100815693 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02024 02 40141182 40144348 Cca02g02024 02 40141182 40144348 ECH
Cca08g00954 08 22682423 22688896 Cca02g02024 02 40141182 40144348 PCT