Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02017 ATGGAATATCATCGATCcaatggcaatggcaatggcaatggcaatggcaatgCAAACCTTTGCAATGGTACCACTGACCCACTTCACTGGGGCATGGCCGCCGAAGCCTTCAAGGGCTCCCACCTCGGCGAGGTCAAACGCATGGTGGACGACTACCGTCACCCGCTCGTCACGCTAGGCGGCAAGACCCTCACCGTCGCTCAGGTGGCGGCGGTTGCCACCCGCCACGACGCCGCCGTGCTTGTGAAGCTGGCCGAGGAGAGCCGCCGCGGTGTCAAGGCCAGCAGTGACTGGGTGCTTGATAGCATGAACCGCGGCACTGATAGCTACGGGGTGACCACGGGCTTCGGTGCAACCTCCCACAGGAGAACAAGACAAGGGGGTGCGCTTCAAAACGAACTCATCAGATTTCTGAATGCTGGGATTTTTGGTAATGGTACAGAGTCTTGTCACACCTTACCTCACTCAGCTACAAGGGCAGCTATGTTGGTTAGGATCAACACCTTGCTTCAAGGATATTCAGGAATTAGATTTGAAATCATGGAGGCCATCGCCAAGTTTTTGAATCATAATATAACCCCATGTCTCCCACTGCGTGGTACGATTACTGCATCAGGTGACTTGGTTCCTTTATCATATGTTGCTGGCCTCTTAATTGGAAGACCAAACTCCAAGTCTATTGGACCCAATGGACAAGTTCTTAATGCTAAAGAGGCATTTCAACTAGCGGGAATTGATGGTGGTTTCTTTGAGTTGCAACCTAAAGAGGGCTTGGCACTAGTGAATGGCACTGCAGTGGGATCTGGCTTGGCCTCCATGGTTCTTTTTGAGGCTAACTTACTTGTTATACTCTCAGAAGTTTTGTCAGCAATTTTTGCTGAAGTTATGCAAGGAAAACCAGAATTCACAGACCACTTGACTCATAAATTGAAGCACCACCCTGGCCAAATTGAGGCTGCAGCAATAATGGAACATATATTAGATGGGAGCTCGTATGTTAAGGCTGCACAAAAGTTACATGAGATCGATCCACTTCAAAAGCCTAAACAAGATAGGTATGCTCTTAGAACATCACCTCAATGGCTTGGACCACAAATTGAAGTAATTAGACATGCAACAAAGATGATTGAAAGAGAGATAAACTCTGTGAATGATAACCCCTTGATTGATGTTTCGAGGAATAAGGCACTTCACGGGGGAAATTTCCAAGGTACCCCAATTGGTGTTTCAATGGATAACACTCGTTTAGCCATTGCATCAATCGGGAAACTTATGTTTGCCCAATTCTCTGAACTTGTCAATGACTTCTACAATAATGGCTTGCCTTCAAATCTAACAGCTAGTCGGAACCCAAGCTTGGATTATGGATTCAAAGGGGCTGAAATTGCAATGGCATCCTACTGTTCAGAACTTCAATACCTTGCCAATCCTGTCACCAATCATGTTCAAAGTGCTGAGCAACATAATCAAGACGTGAACTCTTTAGGCTTAATTTCTTCAAGAAAGACATCTGAAGCACTAGACATATTAAAGCTCATGTCCTCCACTTTCTTAGTTGCACTATGCCAAGCCATTGATCTGAGGCATTTGGAGGAAAACTTGAAGAACACTGTTAAGAATACTGTGAGTCAAGTTGCCAAAAGAGTTCTCACAGTTGGCATCAATGGTGAGTTACATCCTTCTAGGTTTTGTGAGAAGGACTTGCTCAAAATTGTTGATCGTGAGTATGTTTTTGCTTATATTGATGACCCCTGCAGTGCAACCTATCCTCTAATGCACAAGTTAAGACTAGTCCTAGTTGATCATGCATTGCAAAATGGTGACAAAGAATCAAATTCAAGTACCTCGATTTTCCAAAAGATAAGAGTCTTTGAGGAAGAGCTCAAGTCTATTTTGCCCAAAGAGGTTGAAAATGTTAGGATTGAAGTTGAGAATGGAAACCCCACTATTCCTAACCGAATCAAGGAATGCAGGTCTTATCCTTTATATAAGTTTGTAAGAGAAAATTTGGGCACAACTTTGCTAACTGGTGAGAAAGCCAGGTCACCTGGTGAAGAATGTGACAAGGTATTTACTGCATTGTGTGAAGGAAAGTTCATTGATCCTTTGTTGGATTGTCTTAAGGAGTGGAATGGTGCTCCTTTGCCAATATGTTAA 2157 0.4358 MEYHRSNGNGNGNGNGNANLCNGTTDPLHWGMAAEAFKGSHLGEVKRMVDDYRHPLVTLGGKTLTVAQVAAVATRHDAAVLVKLAEESRRGVKASSDWVLDSMNRGTDSYGVTTGFGATSHRRTRQGGALQNELIRFLNAGIFGNGTESCHTLPHSATRAAMLVRINTLLQGYSGIRFEIMEAIAKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSIGPNGQVLNAKEAFQLAGIDGGFFELQPKEGLALVNGTAVGSGLASMVLFEANLLVILSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTSEALDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKRVLTVGINGELHPSRFCEKDLLKIVDREYVFAYIDDPCSATYPLMHKLRLVLVDHALQNGDKESNSSTSIFQKIRVFEEELKSILPKEVENVRIEVENGNPTIPNRIKECRSYPLYKFVRENLGTTLLTGEKARSPGEECDKVFTALCEGKFIDPLLDCLKEWNGAPLPIC 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02017 718 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 14 718 - -
Cca02g02017 718 Gene3D - 17 264 IPR024083 -
Cca02g02017 718 Pfam Aromatic amino acid lyase 64 541 IPR001106 -
Cca02g02017 718 SUPERFAMILY L-aspartase-like 26 718 IPR008948 GO:0003824
Cca02g02017 718 PANTHER HISTIDINE AMMONIA-LYASE 14 718 IPR001106 -
Cca02g02017 718 CDD PAL-HAL 62 528 IPR001106 -
Cca02g02017 718 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 200 216 IPR022313 GO:0016841
Cca02g02017 718 Gene3D Fumarase/aspartase (Central domain) 265 713 - -
Cca02g02017 718 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 26 708 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cca02g02017 718 Gene3D - 531 652 IPR023144 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02017 Cca-Chr2 40029222 40035096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02017 26 718 Monolignol Biosynthesis Gene Families AT3G53260 82.540 0.0 1215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02017 K10775 - gmx:100801470 1313.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00447 02 9383268 9387664 Cca02g02017 02 40029222 40035096 ECH
Cca03g02377 03 44822877 44826162 Cca02g02017 02 40029222 40035096 ECH
Cca02g02017 02 40029222 40035096 Cca02g02017 02 40029222 40035096 ECH