Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca02g02013 | ATGGGTGGTGTTGAAATCCCCAATTGGCTGAAAGGGTTGCCACTGGCGCCAGTATTTCGCCCTACAGACACTGAATTTGCTGACCCAATTGCTTATATTTCAAAGATTGAGAAGGAAGCTGCCAACTTTGGGATTTGTAAGATAATTCCACCGTTGCCCAAACCTTCAAAAAGATATGTATTTTCTAATTTGAATAGGTCACTCTTGAAGTGCCCTGATTTGGGTCCTGATAGCAGTTCATTAGGTGTTTGTAATTCTTCAAAAACCAGTTCTGGGGATAGTAGTAGTTTTGGGGTGTCGCGAGCCGTGTTTACCACAAGGCACCAAGAACTAGGGCAGAGTCAGAGTGTGAAAAAATCCAAAGGGGCAGTTCAGAATCCACTGTCAGGTGTTCATAAGCAAGTATGGCAAAGTGGGGAAGCTTATACTCTGGAACAGTTTGAGTCTAAATCGAAGTCTTTTGCGAGAAGTGTGCTCGGTCCGGTGAAGGATGTTTCTCCATTGGTTATAGAGTCTCTGTTTTGGAAGGCATCTTTAGATAAGCCTATATATGTGGAGTATGCCAATGACGTGCCCGGTTCAGCTTTTGAAGAGTCCAAGGGTCAATTTAAGTATAGTCATAGAAGGCGAAGAAAAAGGACTTATTATAAGAGTAGGCTAGATAGCTCTGATTGTAAACAAACTGAAATGGGTTGTGTTAGAGATACACAAACTGATGAGACTATGGATGCTTCTGCCCCAAGTCATGCAGAACCGTGTTTGCAGATGACCAAATCAGCTACAACTGTGTCAACATTTTCATCAAACGAAGATTCACATTCGCAACCTTCTAAGGAAAAGGGTTCAGATGCCAGCAATGATATGCAAGGCACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAACTTGCAAGTTATTGCACGCTCATCTGGCTCACTCACACGATTTATGCCGGATGATATTCCTGGTGTCACTTCACCTATGGTATACATTGGTATGCTGTTCAGTTGGTTTGCTTGGCATGTAGAGGATCATGAGCTTCACAGCATGAATTTTCTTCATACTGGCTCATCAAAGACTTGGTATGCTGTTCCAGGAGATTATGCCTTTGCCTTTGAGGAAGTCATCCGGACCAAGGGTTATGGTGGTAATGTTGATCACTTAGCTGCTTTGAAACTTTTGGGTGAGAAAACAACCCTTTTATCACCTGAGGTAATTGTTGCATCTGGGATTCCTTGTTGCAGGTTAACACAGAACCCTGGTGAATTTGTTGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGAACTCCCCAATGGCTTAGAGTAGCTAAGGAAGCTGCAGTGCGCCGAGCTGCAATGAACTATCTTCCCATGCTTTCCCATCAGCAACTGCTTTACTTACTGACCATGTCTTTTATTTCAAGAGTGCCAAGAACACTATTACCTGGTGTGCGTAGTTCTCGTCTGAGAGACCGTCAGAAAGAAGAGAGGGAGATTTTAGTTAAACAGGCTTTTATAGAAGACATGCTACTGGAAAACAAGCTACTATCCATTCTTCTTGGAAAGGAAGCAACTAAAAAAGCTGTTTTATGGAATGCTGATTTACTGCCAGATTCCAGCAAAGATTTTCAGTTGCCGGATTTAACTTCTACTACTGGAACATCTGTGTCAGACATGTCAAATATTAGTTCTGCAGAAAAGAGTAGTCATTATCTTCTTGATGAGATGAGTTTGTATATGGATAATTTAACCTATTTAGATCTTGGTGATGATGATCTTCCATGTCACTTCCAAACTGATTCAGGAGCACTTGCTTGTGTGGGTTGTGGAATCCTTGGTTTTCCATTTATGACTGTGATACAACCAACTGAGAAATTGACAATGGAACTTCTTCCAGATAATCATCTAGTTCATGTTTCCTCTCCAGACTCTACAGCTTGCATTCGTAGTTCCATCTCAAGGGATCTTTCTATTTCTGAACTTTCATCAGTAAAGGTGTTGCCAGATCAATCTTTAAACATGTGCAGTAAATATTGGAACACCTCCAGTAAATTTTTGAGGCCTAGGATTTTCTGCCTGGAGCATGCTGTTCAACTAGTAGAGATGTTGGAGAGCAAAGGTGGAGCCAATGTGCTTATAATTTGCCATTCAGACTTTCAGAAGATAAAGGCACATGCCAGTGCAGTCGCGGATGAGATACATAGTGCTTTTGATTATAATGAGGTTCCATTAGAAACAGCATCCTCAGAATATTTGACTCTGATAGATCGGGCAATTGATGGTGAAGAACTTGATGAATGCGAAGATTGGACATCTAAACTAGGCATTAACCTACAGTCTTGTGTCCATGCAAGAAATAACCCTCTATCTAAACAAGTTCCTTGGACACTAGGGACGCTGTTCTACGGTAAACCTCCTGCTTCAAAAATTTTAGCTTTAAATTGGCAGTCGCAAAGATCTCGGTCTAAAAAGTCAAGTCGTTTAGCTCAGACTAAACCCTGTGACAGCATTCAGAGAAAGAATGGTGATCGGTTGGATGGAAGAATAGATGACTCCACTTCTGAAAAGAAGTTAATTCAATATTCAAGGAGGAAGTTCAAGTCAAAGCAAAGGTGTTTCCCTGTAGTAAGCATGGCCTGTGATTTCCAAGAGAAGTCCAAAATTGTGTCGGCTATCTCAAGTGGGGATCATTATAATTGTGTTTCTAAAAATGGGCTTGAAGCTGAGAATTTCAGGAGTGATTGTACATTGTCATGTGTCTCTACTTCTACTGAAATGTTTCCAATGCATCCTGAAATCCAGATTGCTGAAATGCCCACCAGTATGAGATTGAATGCTGCTAAGTCACAATCTTCGAATTCCATTCATGATCATATTTTGATGATCGAAAAAGTTGGAGCAGAGACTGAGAATCAAACTCTGCAGGAATCAGACCAAGACAGAAGAAATGATTTAACAGTCAGTCATTCTAAGATGCATTGCAATACCAGTGTCTCAGAAATACGTCGCAAGGAGAGCCAAGATTGTCAGGACAAGAAATATTCTAGTTCACTTACAAATGCAACAGATAGAAATATTGAAATGATTAGAAAGACTGAAAATACAGAAGCAGTTATCACTCGTAGCGAGTGTAATAGCTTAAGTCTGTATGATGAAGTGCATCAAGAATATCAGTCTACTTGCAAAAGCAACAATGACGAAGCTGCTTTATCACCTGCTTCATTGGTAAATCATTCTACTCTTGCCTCTAGGGATGGAAGTTTTGAAAGTCCAAATAATTATACTGCAGAAAGAATTAGCAATCCTATTTTCTTAGAAACAAGAACTGAGGAAGGAATTGATTCTTTAAGTGAAAGGGACAAGGAACCTCTAATTGATGACCAACCAATTAGCAAACCTACTCCAAAAGATGTTTGTAAAGTTCAAAGAGAGCATTATGCTTCTGCAGACTTGCGTAATAACATAATTTTGGATACTGAGATGCAACAAGAAACTCAGGGTGGGGAAGATGCTGGAGGGTTGAATGAGGAAGTGATTCCAGAGTCCGTGGAGCAGTGTCAGATGAAAAATAAGAATAAAATTAATGAGACACCTGTTTCTGGCTATGTTGCCAAAGGTGAAAATAAAAGCCTAACTACATCAGAATTAGGCTGTTCTGAAGTTTTGGTGGAAACCTGTCCTAAAGAATACTCCTGTATTCAATTTATTTCAGATAAAGAAAAAGAAATGAAAATCCAGTCAATTAATAGAATTGATGAAGAACATTGCTCTGGCACTGATGCATTGCTAAAGGACTCTTCTCTATCAATTGAGGAATGTTCTGAAACTGAGAAAGAGACGTGTGTTAGAGAAAACGTGAATGGAATCAAAGCTGATTTGTCACAAAATAATAGGGGGCAGGAAAGCTGTGAGTTGACTACAGCAGTTCCCAGATCAAATGCTCGGAAGAAAAGGAAGAGGGAAGTAGAACATACAGCAAAAGGCCAATCCAATTGTGACAACTTTATTAGAAGTCCATGTGAAGGGCTGAGGCCAAGAGCTGGGAAGAATGCTGGTGGCAAAAGTGGGGTGGAAATCAACCAAATTGACAAGGAAAATCAGTTGGCTAAAAGAGCACGGAGATCTTCTGAAGTTTTGGTTCCTCGCAAAAATAAAAAAGATGATGTTAAAAGGCCCCACAAGTGTGACCTTGATGGTTGCCGAATGAGTTTCAAGACTAAGGCCGAGTTACTGTTGCATAAACGAAACCTCTGCCCACATGAAGGGTGCGGTAAGAAGTTCAGCTCCCACAAATATGCTTTACTTCACCAGCGTGTTCATGATGATGAGAGGCCCCTTAAGTGCCCATGGAAAGGTTGTTCCATGACATTCAAGTGGGCATGGGCAAGGACAGAGCATATACGTGTACATACCGGGGAGAAGCCTTATCAATGCAAGGTTGAGGGATGCGGCCTTTCTTTCAGGTTTGTATCAGATTTTAGCAGGCACAGACGGAAAACGGGGCATAATGTGAAAGCTCCTGCTTGA | 4566 | 0.4095 | MGGVEIPNWLKGLPLAPVFRPTDTEFADPIAYISKIEKEAANFGICKIIPPLPKPSKRYVFSNLNRSLLKCPDLGPDSSSLGVCNSSKTSSGDSSSFGVSRAVFTTRHQELGQSQSVKKSKGAVQNPLSGVHKQVWQSGEAYTLEQFESKSKSFARSVLGPVKDVSPLVIESLFWKASLDKPIYVEYANDVPGSAFEESKGQFKYSHRRRRKRTYYKSRLDSSDCKQTEMGCVRDTQTDETMDASAPSHAEPCLQMTKSATTVSTFSSNEDSHSQPSKEKGSDASNDMQGTAGWKLSNSPWNLQVIARSSGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGSSKTWYAVPGDYAFAFEEVIRTKGYGGNVDHLAALKLLGEKTTLLSPEVIVASGIPCCRLTQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLRVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFISRVPRTLLPGVRSSRLRDRQKEEREILVKQAFIEDMLLENKLLSILLGKEATKKAVLWNADLLPDSSKDFQLPDLTSTTGTSVSDMSNISSAEKSSHYLLDEMSLYMDNLTYLDLGDDDLPCHFQTDSGALACVGCGILGFPFMTVIQPTEKLTMELLPDNHLVHVSSPDSTACIRSSISRDLSISELSSVKVLPDQSLNMCSKYWNTSSKFLRPRIFCLEHAVQLVEMLESKGGANVLIICHSDFQKIKAHASAVADEIHSAFDYNEVPLETASSEYLTLIDRAIDGEELDECEDWTSKLGINLQSCVHARNNPLSKQVPWTLGTLFYGKPPASKILALNWQSQRSRSKKSSRLAQTKPCDSIQRKNGDRLDGRIDDSTSEKKLIQYSRRKFKSKQRCFPVVSMACDFQEKSKIVSAISSGDHYNCVSKNGLEAENFRSDCTLSCVSTSTEMFPMHPEIQIAEMPTSMRLNAAKSQSSNSIHDHILMIEKVGAETENQTLQESDQDRRNDLTVSHSKMHCNTSVSEIRRKESQDCQDKKYSSSLTNATDRNIEMIRKTENTEAVITRSECNSLSLYDEVHQEYQSTCKSNNDEAALSPASLVNHSTLASRDGSFESPNNYTAERISNPIFLETRTEEGIDSLSERDKEPLIDDQPISKPTPKDVCKVQREHYASADLRNNIILDTEMQQETQGGEDAGGLNEEVIPESVEQCQMKNKNKINETPVSGYVAKGENKSLTTSELGCSEVLVETCPKEYSCIQFISDKEKEMKIQSINRIDEEHCSGTDALLKDSSLSIEECSETEKETCVRENVNGIKADLSQNNRGQESCELTTAVPRSNARKKRKREVEHTAKGQSNCDNFIRSPCEGLRPRAGKNAGGKSGVEINQIDKENQLAKRARRSSEVLVPRKNKKDDVKRPHKCDLDGCRMSFKTKAELLLHKRNLCPHEGCGKKFSSHKYALLHQRVHDDERPLKCPWKGCSMTFKWAWARTEHIRVHTGEKPYQCKVEGCGLSFRFVSDFSRHRRKTGHNVKAPA | 1521 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca02g02013 | 1521 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 1431 | 1453 | IPR013087 | - | |
Cca02g02013 | 1521 | ProSiteProfiles | JmjC domain profile. | 295 | 464 | IPR003347 | - | |
Cca02g02013 | 1521 | PANTHER | LYSINE-SPECIFIC DEMETHYLASE ELF6-RELATED | 1 | 1510 | - | - | |
Cca02g02013 | 1521 | SUPERFAMILY | Clavaminate synthase-like | 295 | 461 | - | - | |
Cca02g02013 | 1521 | MobiDBLite | consensus disorder prediction | 834 | 849 | - | - | |
Cca02g02013 | 1521 | Gene3D | Cupin | 9 | 468 | - | - | |
Cca02g02013 | 1521 | Pfam | JmjC domain, hydroxylase | 328 | 447 | IPR003347 | - | |
Cca02g02013 | 1521 | Gene3D | Classic Zinc Finger | 1427 | 1513 | - | - | |
Cca02g02013 | 1521 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 1429 | 1458 | IPR013087 | - | |
Cca02g02013 | 1521 | SUPERFAMILY | beta-beta-alpha zinc fingers | 1430 | 1466 | IPR036236 | - | |
Cca02g02013 | 1521 | MobiDBLite | consensus disorder prediction | 1385 | 1404 | - | - | |
Cca02g02013 | 1521 | PANTHER | LYSINE-SPECIFIC DEMETHYLASE | 1 | 1510 | - | - | |
Cca02g02013 | 1521 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 1459 | 1488 | IPR013087 | - | |
Cca02g02013 | 1521 | SMART | c2h2final6 | 1429 | 1453 | IPR013087 | - | |
Cca02g02013 | 1521 | SMART | c2h2final6 | 1489 | 1515 | IPR013087 | - | |
Cca02g02013 | 1521 | SMART | c2h2final6 | 1406 | 1428 | IPR013087 | - | |
Cca02g02013 | 1521 | SMART | c2h2final6 | 1459 | 1483 | IPR013087 | - | |
Cca02g02013 | 1521 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 1489 | 1520 | IPR013087 | - | |
Cca02g02013 | 1521 | MobiDBLite | consensus disorder prediction | 264 | 291 | - | - | |
Cca02g02013 | 1521 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 1461 | 1483 | IPR013087 | - | |
Cca02g02013 | 1521 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 1491 | 1515 | IPR013087 | - | |
Cca02g02013 | 1521 | SUPERFAMILY | beta-beta-alpha zinc fingers | 1469 | 1514 | IPR036236 | - | |
Cca02g02013 | 1521 | SMART | JmjN_1 | 15 | 55 | IPR003349 | - | |
Cca02g02013 | 1521 | SMART | cupin_9 | 295 | 464 | IPR003347 | - | |
Cca02g02013 | 1521 | ProSiteProfiles | JmjN domain profile. | 16 | 57 | IPR003349 | - | |
Cca02g02013 | 1521 | Pfam | jmjN domain | 17 | 50 | IPR003349 | - | |
Cca02g02013 | 1521 | MobiDBLite | consensus disorder prediction | 834 | 863 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca02g02013 | Cca-Chr2 | 39978544 | 39988697 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca02g02013 | 1 | 878 | C2H2 Transcription Factor Family | AT5G04240 | 55.741 | 0.0 | 946 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Cca02g02013 | JmjC | 2.3e-36 | CL0029 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca02g02013 | - | - | gmx:100799861 | 2548.47 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca02g02013 | 02 | 39978544 | 39988697 | Cca02g02013 | 02 | 39978544 | 39988697 | ECH |