Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02013 ATGGGTGGTGTTGAAATCCCCAATTGGCTGAAAGGGTTGCCACTGGCGCCAGTATTTCGCCCTACAGACACTGAATTTGCTGACCCAATTGCTTATATTTCAAAGATTGAGAAGGAAGCTGCCAACTTTGGGATTTGTAAGATAATTCCACCGTTGCCCAAACCTTCAAAAAGATATGTATTTTCTAATTTGAATAGGTCACTCTTGAAGTGCCCTGATTTGGGTCCTGATAGCAGTTCATTAGGTGTTTGTAATTCTTCAAAAACCAGTTCTGGGGATAGTAGTAGTTTTGGGGTGTCGCGAGCCGTGTTTACCACAAGGCACCAAGAACTAGGGCAGAGTCAGAGTGTGAAAAAATCCAAAGGGGCAGTTCAGAATCCACTGTCAGGTGTTCATAAGCAAGTATGGCAAAGTGGGGAAGCTTATACTCTGGAACAGTTTGAGTCTAAATCGAAGTCTTTTGCGAGAAGTGTGCTCGGTCCGGTGAAGGATGTTTCTCCATTGGTTATAGAGTCTCTGTTTTGGAAGGCATCTTTAGATAAGCCTATATATGTGGAGTATGCCAATGACGTGCCCGGTTCAGCTTTTGAAGAGTCCAAGGGTCAATTTAAGTATAGTCATAGAAGGCGAAGAAAAAGGACTTATTATAAGAGTAGGCTAGATAGCTCTGATTGTAAACAAACTGAAATGGGTTGTGTTAGAGATACACAAACTGATGAGACTATGGATGCTTCTGCCCCAAGTCATGCAGAACCGTGTTTGCAGATGACCAAATCAGCTACAACTGTGTCAACATTTTCATCAAACGAAGATTCACATTCGCAACCTTCTAAGGAAAAGGGTTCAGATGCCAGCAATGATATGCAAGGCACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAACTTGCAAGTTATTGCACGCTCATCTGGCTCACTCACACGATTTATGCCGGATGATATTCCTGGTGTCACTTCACCTATGGTATACATTGGTATGCTGTTCAGTTGGTTTGCTTGGCATGTAGAGGATCATGAGCTTCACAGCATGAATTTTCTTCATACTGGCTCATCAAAGACTTGGTATGCTGTTCCAGGAGATTATGCCTTTGCCTTTGAGGAAGTCATCCGGACCAAGGGTTATGGTGGTAATGTTGATCACTTAGCTGCTTTGAAACTTTTGGGTGAGAAAACAACCCTTTTATCACCTGAGGTAATTGTTGCATCTGGGATTCCTTGTTGCAGGTTAACACAGAACCCTGGTGAATTTGTTGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGAACTCCCCAATGGCTTAGAGTAGCTAAGGAAGCTGCAGTGCGCCGAGCTGCAATGAACTATCTTCCCATGCTTTCCCATCAGCAACTGCTTTACTTACTGACCATGTCTTTTATTTCAAGAGTGCCAAGAACACTATTACCTGGTGTGCGTAGTTCTCGTCTGAGAGACCGTCAGAAAGAAGAGAGGGAGATTTTAGTTAAACAGGCTTTTATAGAAGACATGCTACTGGAAAACAAGCTACTATCCATTCTTCTTGGAAAGGAAGCAACTAAAAAAGCTGTTTTATGGAATGCTGATTTACTGCCAGATTCCAGCAAAGATTTTCAGTTGCCGGATTTAACTTCTACTACTGGAACATCTGTGTCAGACATGTCAAATATTAGTTCTGCAGAAAAGAGTAGTCATTATCTTCTTGATGAGATGAGTTTGTATATGGATAATTTAACCTATTTAGATCTTGGTGATGATGATCTTCCATGTCACTTCCAAACTGATTCAGGAGCACTTGCTTGTGTGGGTTGTGGAATCCTTGGTTTTCCATTTATGACTGTGATACAACCAACTGAGAAATTGACAATGGAACTTCTTCCAGATAATCATCTAGTTCATGTTTCCTCTCCAGACTCTACAGCTTGCATTCGTAGTTCCATCTCAAGGGATCTTTCTATTTCTGAACTTTCATCAGTAAAGGTGTTGCCAGATCAATCTTTAAACATGTGCAGTAAATATTGGAACACCTCCAGTAAATTTTTGAGGCCTAGGATTTTCTGCCTGGAGCATGCTGTTCAACTAGTAGAGATGTTGGAGAGCAAAGGTGGAGCCAATGTGCTTATAATTTGCCATTCAGACTTTCAGAAGATAAAGGCACATGCCAGTGCAGTCGCGGATGAGATACATAGTGCTTTTGATTATAATGAGGTTCCATTAGAAACAGCATCCTCAGAATATTTGACTCTGATAGATCGGGCAATTGATGGTGAAGAACTTGATGAATGCGAAGATTGGACATCTAAACTAGGCATTAACCTACAGTCTTGTGTCCATGCAAGAAATAACCCTCTATCTAAACAAGTTCCTTGGACACTAGGGACGCTGTTCTACGGTAAACCTCCTGCTTCAAAAATTTTAGCTTTAAATTGGCAGTCGCAAAGATCTCGGTCTAAAAAGTCAAGTCGTTTAGCTCAGACTAAACCCTGTGACAGCATTCAGAGAAAGAATGGTGATCGGTTGGATGGAAGAATAGATGACTCCACTTCTGAAAAGAAGTTAATTCAATATTCAAGGAGGAAGTTCAAGTCAAAGCAAAGGTGTTTCCCTGTAGTAAGCATGGCCTGTGATTTCCAAGAGAAGTCCAAAATTGTGTCGGCTATCTCAAGTGGGGATCATTATAATTGTGTTTCTAAAAATGGGCTTGAAGCTGAGAATTTCAGGAGTGATTGTACATTGTCATGTGTCTCTACTTCTACTGAAATGTTTCCAATGCATCCTGAAATCCAGATTGCTGAAATGCCCACCAGTATGAGATTGAATGCTGCTAAGTCACAATCTTCGAATTCCATTCATGATCATATTTTGATGATCGAAAAAGTTGGAGCAGAGACTGAGAATCAAACTCTGCAGGAATCAGACCAAGACAGAAGAAATGATTTAACAGTCAGTCATTCTAAGATGCATTGCAATACCAGTGTCTCAGAAATACGTCGCAAGGAGAGCCAAGATTGTCAGGACAAGAAATATTCTAGTTCACTTACAAATGCAACAGATAGAAATATTGAAATGATTAGAAAGACTGAAAATACAGAAGCAGTTATCACTCGTAGCGAGTGTAATAGCTTAAGTCTGTATGATGAAGTGCATCAAGAATATCAGTCTACTTGCAAAAGCAACAATGACGAAGCTGCTTTATCACCTGCTTCATTGGTAAATCATTCTACTCTTGCCTCTAGGGATGGAAGTTTTGAAAGTCCAAATAATTATACTGCAGAAAGAATTAGCAATCCTATTTTCTTAGAAACAAGAACTGAGGAAGGAATTGATTCTTTAAGTGAAAGGGACAAGGAACCTCTAATTGATGACCAACCAATTAGCAAACCTACTCCAAAAGATGTTTGTAAAGTTCAAAGAGAGCATTATGCTTCTGCAGACTTGCGTAATAACATAATTTTGGATACTGAGATGCAACAAGAAACTCAGGGTGGGGAAGATGCTGGAGGGTTGAATGAGGAAGTGATTCCAGAGTCCGTGGAGCAGTGTCAGATGAAAAATAAGAATAAAATTAATGAGACACCTGTTTCTGGCTATGTTGCCAAAGGTGAAAATAAAAGCCTAACTACATCAGAATTAGGCTGTTCTGAAGTTTTGGTGGAAACCTGTCCTAAAGAATACTCCTGTATTCAATTTATTTCAGATAAAGAAAAAGAAATGAAAATCCAGTCAATTAATAGAATTGATGAAGAACATTGCTCTGGCACTGATGCATTGCTAAAGGACTCTTCTCTATCAATTGAGGAATGTTCTGAAACTGAGAAAGAGACGTGTGTTAGAGAAAACGTGAATGGAATCAAAGCTGATTTGTCACAAAATAATAGGGGGCAGGAAAGCTGTGAGTTGACTACAGCAGTTCCCAGATCAAATGCTCGGAAGAAAAGGAAGAGGGAAGTAGAACATACAGCAAAAGGCCAATCCAATTGTGACAACTTTATTAGAAGTCCATGTGAAGGGCTGAGGCCAAGAGCTGGGAAGAATGCTGGTGGCAAAAGTGGGGTGGAAATCAACCAAATTGACAAGGAAAATCAGTTGGCTAAAAGAGCACGGAGATCTTCTGAAGTTTTGGTTCCTCGCAAAAATAAAAAAGATGATGTTAAAAGGCCCCACAAGTGTGACCTTGATGGTTGCCGAATGAGTTTCAAGACTAAGGCCGAGTTACTGTTGCATAAACGAAACCTCTGCCCACATGAAGGGTGCGGTAAGAAGTTCAGCTCCCACAAATATGCTTTACTTCACCAGCGTGTTCATGATGATGAGAGGCCCCTTAAGTGCCCATGGAAAGGTTGTTCCATGACATTCAAGTGGGCATGGGCAAGGACAGAGCATATACGTGTACATACCGGGGAGAAGCCTTATCAATGCAAGGTTGAGGGATGCGGCCTTTCTTTCAGGTTTGTATCAGATTTTAGCAGGCACAGACGGAAAACGGGGCATAATGTGAAAGCTCCTGCTTGA 4566 0.4095 MGGVEIPNWLKGLPLAPVFRPTDTEFADPIAYISKIEKEAANFGICKIIPPLPKPSKRYVFSNLNRSLLKCPDLGPDSSSLGVCNSSKTSSGDSSSFGVSRAVFTTRHQELGQSQSVKKSKGAVQNPLSGVHKQVWQSGEAYTLEQFESKSKSFARSVLGPVKDVSPLVIESLFWKASLDKPIYVEYANDVPGSAFEESKGQFKYSHRRRRKRTYYKSRLDSSDCKQTEMGCVRDTQTDETMDASAPSHAEPCLQMTKSATTVSTFSSNEDSHSQPSKEKGSDASNDMQGTAGWKLSNSPWNLQVIARSSGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGSSKTWYAVPGDYAFAFEEVIRTKGYGGNVDHLAALKLLGEKTTLLSPEVIVASGIPCCRLTQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLRVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFISRVPRTLLPGVRSSRLRDRQKEEREILVKQAFIEDMLLENKLLSILLGKEATKKAVLWNADLLPDSSKDFQLPDLTSTTGTSVSDMSNISSAEKSSHYLLDEMSLYMDNLTYLDLGDDDLPCHFQTDSGALACVGCGILGFPFMTVIQPTEKLTMELLPDNHLVHVSSPDSTACIRSSISRDLSISELSSVKVLPDQSLNMCSKYWNTSSKFLRPRIFCLEHAVQLVEMLESKGGANVLIICHSDFQKIKAHASAVADEIHSAFDYNEVPLETASSEYLTLIDRAIDGEELDECEDWTSKLGINLQSCVHARNNPLSKQVPWTLGTLFYGKPPASKILALNWQSQRSRSKKSSRLAQTKPCDSIQRKNGDRLDGRIDDSTSEKKLIQYSRRKFKSKQRCFPVVSMACDFQEKSKIVSAISSGDHYNCVSKNGLEAENFRSDCTLSCVSTSTEMFPMHPEIQIAEMPTSMRLNAAKSQSSNSIHDHILMIEKVGAETENQTLQESDQDRRNDLTVSHSKMHCNTSVSEIRRKESQDCQDKKYSSSLTNATDRNIEMIRKTENTEAVITRSECNSLSLYDEVHQEYQSTCKSNNDEAALSPASLVNHSTLASRDGSFESPNNYTAERISNPIFLETRTEEGIDSLSERDKEPLIDDQPISKPTPKDVCKVQREHYASADLRNNIILDTEMQQETQGGEDAGGLNEEVIPESVEQCQMKNKNKINETPVSGYVAKGENKSLTTSELGCSEVLVETCPKEYSCIQFISDKEKEMKIQSINRIDEEHCSGTDALLKDSSLSIEECSETEKETCVRENVNGIKADLSQNNRGQESCELTTAVPRSNARKKRKREVEHTAKGQSNCDNFIRSPCEGLRPRAGKNAGGKSGVEINQIDKENQLAKRARRSSEVLVPRKNKKDDVKRPHKCDLDGCRMSFKTKAELLLHKRNLCPHEGCGKKFSSHKYALLHQRVHDDERPLKCPWKGCSMTFKWAWARTEHIRVHTGEKPYQCKVEGCGLSFRFVSDFSRHRRKTGHNVKAPA 1521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02013 1521 ProSitePatterns Zinc finger C2H2 type domain signature. 1431 1453 IPR013087 -
Cca02g02013 1521 ProSiteProfiles JmjC domain profile. 295 464 IPR003347 -
Cca02g02013 1521 PANTHER LYSINE-SPECIFIC DEMETHYLASE ELF6-RELATED 1 1510 - -
Cca02g02013 1521 SUPERFAMILY Clavaminate synthase-like 295 461 - -
Cca02g02013 1521 MobiDBLite consensus disorder prediction 834 849 - -
Cca02g02013 1521 Gene3D Cupin 9 468 - -
Cca02g02013 1521 Pfam JmjC domain, hydroxylase 328 447 IPR003347 -
Cca02g02013 1521 Gene3D Classic Zinc Finger 1427 1513 - -
Cca02g02013 1521 ProSiteProfiles Zinc finger C2H2 type domain profile. 1429 1458 IPR013087 -
Cca02g02013 1521 SUPERFAMILY beta-beta-alpha zinc fingers 1430 1466 IPR036236 -
Cca02g02013 1521 MobiDBLite consensus disorder prediction 1385 1404 - -
Cca02g02013 1521 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 1510 - -
Cca02g02013 1521 ProSiteProfiles Zinc finger C2H2 type domain profile. 1459 1488 IPR013087 -
Cca02g02013 1521 SMART c2h2final6 1429 1453 IPR013087 -
Cca02g02013 1521 SMART c2h2final6 1489 1515 IPR013087 -
Cca02g02013 1521 SMART c2h2final6 1406 1428 IPR013087 -
Cca02g02013 1521 SMART c2h2final6 1459 1483 IPR013087 -
Cca02g02013 1521 ProSiteProfiles Zinc finger C2H2 type domain profile. 1489 1520 IPR013087 -
Cca02g02013 1521 MobiDBLite consensus disorder prediction 264 291 - -
Cca02g02013 1521 ProSitePatterns Zinc finger C2H2 type domain signature. 1461 1483 IPR013087 -
Cca02g02013 1521 ProSitePatterns Zinc finger C2H2 type domain signature. 1491 1515 IPR013087 -
Cca02g02013 1521 SUPERFAMILY beta-beta-alpha zinc fingers 1469 1514 IPR036236 -
Cca02g02013 1521 SMART JmjN_1 15 55 IPR003349 -
Cca02g02013 1521 SMART cupin_9 295 464 IPR003347 -
Cca02g02013 1521 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Cca02g02013 1521 Pfam jmjN domain 17 50 IPR003349 -
Cca02g02013 1521 MobiDBLite consensus disorder prediction 834 863 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02013 Cca-Chr2 39978544 39988697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02013 1 878 C2H2 Transcription Factor Family AT5G04240 55.741 0.0 946
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca02g02013 JmjC 2.3e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02013 - - gmx:100799861 2548.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02013 02 39978544 39988697 Cca02g02013 02 39978544 39988697 ECH