Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02012 ATGTGCAAATCGAAACGGAGCACAAGCGCCGTACAACCCAGAACACGAAGAAACACAAGCATGACTGATGAGTCTCCGCGACCTACCAgaacacgaacactaacactaacatcgtcatcgtcgaactacgaaacgacgacgaGCGACGTGGCAATCACGGAATCAAGAAGCTACGTATACGAGGAGAAGAACAGCAGAGAGAAAGAGTGGTCAAACGCATCCTCCATCTCCAGCCACGCCTCTCTCTCAAGCCTCAAAGACACGCTCCCCGAAAACCCTAACATCTACCCCTTCTCCGAGATCTCCGCCGCCACCGCCAAATTCTCCAATCCCCGCCTCTCCTCCTCCGCCTGGCGCTGCTCCCTCCGCGCCCGCGACGTCGTCGTCTTCCGTCGCACCTTCCGCCGCCCCATCGACCTCCCGGAGCTCCGCCACCGCCTCGCCCTCATCTGCCGGAGCCACCACAGCAGCCTCGTCAAGctcctcggcgcctccgtctccggctccgccatcttcctcgtctacgaattcgtccccgGCGCCAGCCTCGCCGACTGCCTCCGCAACCGCCGGAACCCTAGCTTCACCGACCTCAACACGTGGTCCTCGCGCATGCAGATCGCCTCCGACGTCGCGCACGGCCTCGACTACATCCACAATTTCtccggttccggttcggattccggttccgatttcggtttcgttcACAACCACATCAAGAGCTCGAGCATTCTCATAACGGAGGAGAATTTGCGCGCCAAAATCTGCCACTTCGGCGCGTCGGATCTCTGCGGTGAGGCCTCCGGTGGCCGGACGGCGAGGCTGGAGGGGACGAGAGGGTACATGGCGCCGGAGTTTCAGGTCTCCGGCGTCGCGACGAAGAAGAGCGACGTGTACGCTTTCGGAGTGGTGGTGTTGGAGCTGCTGAGCGGGGAGGAGGCGTTGAAATTCGAATTCCACGACGACGGTAGTTACCGGAGGACGAGCGTAGTGGAGAcggcgcgggcggcggtgacggagagcggcggcgTGAGGAAGTGGGTGGATAAGAGGCTGAGGGATTCGTTTCCCGTGGGCGTTGCCGAGAGAATGATTCGGGTCGGGTTGGAGTGTGTAGGAAACGACCCGAACGAAAGACCGGATATGGGTTGGGTTTCGATTGAGGTGTCGAAGTTGTACTTGGAATCGAAGGAGTGGGATGAGAAAATGGGAAATAATATTGATTTGTCGGTCTCGTTGGCCCCACGGTGA 1251 0.502 MCKSKRSTSAVQPRTRRNTSMTDESPRPTRTRTLTLTSSSSNYETTTSDVAITESRSYVYEEKNSREKEWSNASSISSHASLSSLKDTLPENPNIYPFSEISAATAKFSNPRLSSSAWRCSLRARDVVVFRRTFRRPIDLPELRHRLALICRSHHSSLVKLLGASVSGSAIFLVYEFVPGASLADCLRNRRNPSFTDLNTWSSRMQIASDVAHGLDYIHNFSGSGSDSGSDFGFVHNHIKSSSILITEENLRAKICHFGASDLCGEASGGRTARLEGTRGYMAPEFQVSGVATKKSDVYAFGVVVLELLSGEEALKFEFHDDGSYRRTSVVETARAAVTESGGVRKWVDKRLRDSFPVGVAERMIRVGLECVGNDPNERPDMGWVSIEVSKLYLESKEWDEKMGNNIDLSVSLAPR 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02012 416 ProSiteProfiles Protein kinase domain profile. 107 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02012 416 PANTHER OS09G0572100 PROTEIN 1 416 - -
Cca02g02012 416 Pfam Protein tyrosine and serine/threonine kinase 142 382 IPR001245 GO:0004672|GO:0006468
Cca02g02012 416 PANTHER OS09G0572100 PROTEIN 1 416 - -
Cca02g02012 416 SUPERFAMILY Protein kinase-like (PK-like) 136 383 IPR011009 -
Cca02g02012 416 Gene3D Phosphorylase Kinase; domain 1 63 177 - -
Cca02g02012 416 MobiDBLite consensus disorder prediction 1 48 - -
Cca02g02012 416 Gene3D Transferase(Phosphotransferase) domain 1 179 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02012 Cca-Chr2 39972416 39973988 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02012 91 406 Receptor kinase-like Gene Family AT1G51940 33.333 1.13e-47 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Cca02g02012 PK_Tyr_Ser-Thr 1.6e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02012 - - gmx:100820374 615.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02012 02 39972416 39973988 Cca02g02012 02 39972416 39973988 ECH