Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02009 ATGATGTGTAGGTGGATCACTAACTCGAAGCATATGTGGCTTCTCATTGTGGCTTCGAGCTTGTTCCTTGGGATGATGCAATGCCAAGAAGTGAATGACTATGACCAAATTGATAGCCCTGCTGTTCTTCCCCTCATTACTCAGCTTGTGTATAGTCAAATCTCCAACTTGACTTCAGTTCTCAGTCAAGAAATAAGTAGAGAATCCACTTTCTGTGTCAAAGATCCGGATGCTGATTGGAATCAAGCATTTAATTTTTCATCTGATTTGGGCTTCTTGGCATCTTGCCTTAAGAAGACTAAAGGAGATATTACAAAACGTTTGTGTACTGCAGCAGAAGTGAAGTTTTACTTAAATAGTTTATTGGGGAAAACTACAAGTGCCAATTATTTAAAGCCTAACAAGAACTGCAATTTAACTTCATGGGTCTCTGGTTGTGAGCCAGGATGGGCCTGTAGTGTTCACTCGAGCCAGAAGGTTGACCTTAAAAATTCCAAAGAGATGCCTACAAGAACTTCAAACTGTCAAGCATGTTGTGAAGGCTTCTTTTGTCCTCATGGTATCACATGCATGATACCATGCCCTCTAGGTTCCTATTGCCCTCTTGCTACACTCAATAAAACAACCGGCATATGTGAACCATATCTTTATCAGCTGCCTCCAATGCAGCCAAACCATACTTGTGGCGGAGCAAATGTTTGGGCAGATGTTAGTAGCAGTAGTGAGATATTTTGCTCAGCTGGATCATATTGTCCAACAACCACAAAAAGAATTTCTTGTAGTAGTGGGCATTACTGCAGGATGGGCTCCACATCTGAGAAAAGATGCTTCAAATTGAGTTCATGTAATTCAAACACAGCAACCCAGAATATGCATGCATATGGAATTATGCTTATTGCTGCTTTGAGTACTTTGCTACTCATTATTTACAATTGTTCTGACCAAGTTCTGACTACTAGGGAAAGAAGAGTGGCCAAATCTAGAGAAGCAGCAGCTAGAAGTGCAAGGAAGACTGCAAATGCACGCCAAAGATGGCACTTTGCAAAAGATGCCACCAAGAAAGGTGCAATGGGGCTGCAAGCTCAACTATCACGCACCTTCAAGAAGGATGCAGCAACTCTGGAAAAGATTAAGATTTTGAATCAAACAACTTCTGAAGCAGATGTTGAATTGTTGCCACATTCGCGACCTACAGCTTCAAGCATCAATATTCCAAGTTCATCTGCAGCGCCAAAGGAAAAGGGAAAAGAATCCAGGGGTCTAATGCATATAATACATGAAATTGAAAATGATCCTGATATTAACGACAACATTAATACAGAAATAGAAACTAGAGATAAAAGTGTTCCAGCAAATGTGTCAAAGGGAAAACAAGCGCATACTCATAGCCAAATTTTTAAGTATGCATATGCTCAACTTGAAAAGGAGAAAGCTCAGCAACAAGAAAACAAGAAACTTACCTTCTCAGGAGTAATTAAAATGGCTACAAACACTGAAAAAAGGAAAAGGCCTTTAATTGAGATTTCATTCAGGGATCTGACTCTTACATTGAAAGCTCAAAATAAACATATATTGAGATATGTTACTGGGAAAATTAAACCTGGCCGCATCACTGCTGTAATGGGTCCATCAGGGGCTGGCAAGACAACATTTCTTTCTGCTCTAGCCGGAAAGGCATTGGGATGCTCAGTCACTGGTTCAATTCTTATAAATGGAAGGAATGAATCAATCCACTCCTTTAAGAAAATTACTGGCTTCGTGCCACAAGATGATGTAGTTCATGGAAACCTGACAGTGGAAGAGAATCTCTGGTTCAGTGCACAGTGCAGGCTATCTGCTGACTTGTCAAAACCAGAAAAAGTATTGGTTGTTGAAAGAGTTATTGAATTCTTGGGGCTTCAATCTGTGCGTAATTCCCTGGTTGGAACTGTGGAAAAGCGAGGGATCTCTGGAGGCCAAAGGAAGCGTGTAAATGTTGGATTGGAAATGGTTATGGAACCTTCACTCTTGATCTTGGATGAACCCACATCTGGCTTGGACAGTGCATCATCTCAGCTCCTTCTAAGAGCACTAAGACGTGAAGCTCTTGAGGGAGTGAACATTTGCATGGTGGTTCATCAACCCAGCTATGCTTTGTTCAAGATGTTTGATGATCTGATACTTCTGGGAAAAGGTGGTCTTACTGTCTATCATGGATCTGCCAAGAAAGTTGAAGAATACTTTTCAAGCTTGGGGATCATTATTCCGGAGCGGATTAATCCCCCAGATTACATCATTGACATTTTGGAGGGTATAGCAGCACCTGGTGGAAGCTCAGGACTCAGTTATAAAGAGCTTCCAGTTAGATGGATGCTTCAAAATGGATATCCAATACCTCTTGATATGAGGCAGAATGCGGTTCAATTTGAAATTTCTGAGAGTGTAAATTCAGCTAATGTAACAGATTCCAATGGATCTGATCACGTGGAAAAAACCTTTGCTGGAGAATTATGGCAAGATATGAGAAACAATGTGAAACTGAGGGGGGAGAAGATCAGACTCAATTTTTTTAAATCCAAGGATTTATCTAACCGGAAAACTCCTGGTGTATTCAAGCAATATAAATATTTTCTTATAAGGGTTGGGAAGCAGCGATTACGAGAAGCTAGGATCCAAGCCATAGATTATCTTATTTTGTTAATTGCTGGAGCCTGCTTAGGATCACTTACCAAAGCAAGTGATCAAACATTTGGTGCAGCTGGGTACACCTATACGGTGATTGCTGTATCTCTTCTATGCAAAATAGCGGCCTTGAGATCATTTTCCCTGGATAAATTACACTATTGGAGGGAGAGTGATTCTGGCATGAGCAGCTTGGCTTATTTTCTCTCCAAAGACACAATTGATCATTTTAATACAGTGATCAAGCCTGTGGTGTATCTTTCTATGTTCTATTTCTTCACCAATCCAAGGTCAACTTTTGCAGATAATTATGTTGTGCTGCTTTGTCTTGTGTACTGTGTCACTGGCATAGCATATGCATTGTCCATACTTTTTGAACCTGGTGCAGCTCAGCTGTGGTCAGTACTTCTTCCAGTTGTTTTGACACTAATTGCAACACAACCAAAAGAGAGCAAAATTTTGAAGAATATAGCTAGTTTATGCTACTCTAAGTGGGCTTTACAAGCATTAGTTGTTGCAAATGCTGAAAGGTATCAGGGAGTGTGGCTCATAACACGTTGTGGTTCACTTTTGAAAAGTGGATATAATCTTCATGATTGGAGTTTATGCATATCCATCCTTATTCTAATGGGTGTAATTGGCCGGGTAGTAGCATTTTTCTGTATGGTCACCTTCCGAAAGAAATAA 3348 0.4038 MMCRWITNSKHMWLLIVASSLFLGMMQCQEVNDYDQIDSPAVLPLITQLVYSQISNLTSVLSQEISRESTFCVKDPDADWNQAFNFSSDLGFLASCLKKTKGDITKRLCTAAEVKFYLNSLLGKTTSANYLKPNKNCNLTSWVSGCEPGWACSVHSSQKVDLKNSKEMPTRTSNCQACCEGFFCPHGITCMIPCPLGSYCPLATLNKTTGICEPYLYQLPPMQPNHTCGGANVWADVSSSSEIFCSAGSYCPTTTKRISCSSGHYCRMGSTSEKRCFKLSSCNSNTATQNMHAYGIMLIAALSTLLLIIYNCSDQVLTTRERRVAKSREAAARSARKTANARQRWHFAKDATKKGAMGLQAQLSRTFKKDAATLEKIKILNQTTSEADVELLPHSRPTASSINIPSSSAAPKEKGKESRGLMHIIHEIENDPDINDNINTEIETRDKSVPANVSKGKQAHTHSQIFKYAYAQLEKEKAQQQENKKLTFSGVIKMATNTEKRKRPLIEISFRDLTLTLKAQNKHILRYVTGKIKPGRITAVMGPSGAGKTTFLSALAGKALGCSVTGSILINGRNESIHSFKKITGFVPQDDVVHGNLTVEENLWFSAQCRLSADLSKPEKVLVVERVIEFLGLQSVRNSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSASSQLLLRALRREALEGVNICMVVHQPSYALFKMFDDLILLGKGGLTVYHGSAKKVEEYFSSLGIIIPERINPPDYIIDILEGIAAPGGSSGLSYKELPVRWMLQNGYPIPLDMRQNAVQFEISESVNSANVTDSNGSDHVEKTFAGELWQDMRNNVKLRGEKIRLNFFKSKDLSNRKTPGVFKQYKYFLIRVGKQRLREARIQAIDYLILLIAGACLGSLTKASDQTFGAAGYTYTVIAVSLLCKIAALRSFSLDKLHYWRESDSGMSSLAYFLSKDTIDHFNTVIKPVVYLSMFYFFTNPRSTFADNYVVLLCLVYCVTGIAYALSILFEPGAAQLWSVLLPVVLTLIATQPKESKILKNIASLCYSKWALQALVVANAERYQGVWLITRCGSLLKSGYNLHDWSLCISILILMGVIGRVVAFFCMVTFRKK 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02009 1115 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 508 750 IPR003439 GO:0005524
Cca02g02009 1115 Pfam ABC transporter 527 677 IPR003439 GO:0005524
Cca02g02009 1115 Gene3D - 506 744 IPR027417 -
Cca02g02009 1115 Pfam ABC-2 type transporter 706 1115 IPR043926 GO:0140359
Cca02g02009 1115 MobiDBLite consensus disorder prediction 394 417 - -
Cca02g02009 1115 PANTHER ABC TRANSPORTER G FAMILY MEMBER 24 35 1112 - -
Cca02g02009 1115 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 508 746 IPR027417 -
Cca02g02009 1115 SMART AAA_5 534 726 IPR003593 -
Cca02g02009 1115 CDD ABCG_EPDR 506 732 - -
Cca02g02009 1115 ProSitePatterns ABC transporters family signature. 649 663 IPR017871 GO:0005524
Cca02g02009 1115 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 35 1112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02009 Cca-Chr2 39954501 39962196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02009 532 727 Calmodulin-binding Proteins AT2G36910 25.116 4.25e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02009 - - gmx:100775464 1970.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00441 02 9284930 9295513 Cca02g02009 02 39954501 39962196 ECH
Cca02g02009 02 39954501 39962196 Cca02g02009 02 39954501 39962196 ECH