Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02006 ATGAATAACTCTGTTTCAGACCACAGTTTTATCATTGAGAGTGATGAAGAAGAGGAGGAGAAGGAATTTAACAAAGGTGGAGATGATGGTAACGATTCTGATTCTTCCAATTACTCTAATGAAAACCCTCCACAGCGAAAACCCAGTTCTTACAACATGTCATGGCCTCAGAGTTACAGGCAGTCTATTGATCTATATAGTAGTGTGCCATCACCAAACATAGGATTTTTGGGCACACCCTCATTGTCAAGACTAAGCAGTTCTTTCCTTTCTACATCACTAACAAGGAGGCACACTCCTGAAGCACTTCCTTCAGTGACAAAGCCTCTTATACAACCATCAGAAGAAGAAGAGCAGCATCAGAGACGAAGTTCTCACACCTTGCTTCCTCCTCTTTCTTCTAGAAGATCTTCCATTAAGAAGGATTCCAAGGTTGCTGCTCATCATGAAGTTCCCTCTCGCCACTGCTCTTATGGACAAGCTGTGCTTAATGGCATAAATGTTCTTTGTGGTGTTGGAATCCTTTCCACCCCTTATGCTGCCAAAGAAGGTGGATGGATTGGGCTTTCTGTCTTGCTCATTTTTGCAATTATTTCATTCTATACTGGGCTCCTCTTGCGTTCCTGCTTGGACAGTGAACCTGAGCTTGAAACATACCCTGATATTGGCCAAGCTGCTTTTGGTACGACTGGACGTATTGCCATTTCAATAGTATTGTACGTGGAATTATATGCGTGTTGCATTGAATATATAATTTTGGAGGGTGACAACTTGTCTTCTTTATTTCCAAGTGCACACTTGAATTTGGGTGGAATTGGCCTGGATTCACGTACACTGTTTGCTGTGATCACTGCCTTGGCCGTTCTTCCTACTGTTTGGCTCCGTGACCTAAGCGTTCTTAGTTACATATCTGCTGGTGGAGTTGTTGCATCAGTTTTAGTGGTTCTCTGCTTGTTATGGGTTGGCGTAGACGATGTAGGCTTTCAAAGCAAAGGGACCGCACTCAATCTTGCAACTTTTCCTGTTGCTATTGGTCTTTATGGTTACTGCTACTCTGGACATGCTGTGTTTCCTAACATTTATACATCCATGGCAAATCCAAACCAATTCCCTGCAGTGCTCTTAGCATGTTTTGGTATTTGTACCGTATTGTATGCTGGAGCTGCTGTAATGGGATACACAATGTTTGGAGAAGCTATACTCTCTCAGTTCACTCTTAACCTGCCTCAAGAGTTGGTAGCCACCAAGATTGCAGTCTGGACTACGGTGGTTAATCCATTTACCAAGTATGCATTGACTATATCTCCGGTGGCAATGAGTCTGGAGGAGTTGATACCATCAAATCATGCAAAGTCTTATCTATATTCAATCTTCATCAGAACAGGGCTGGTACTTTCTACCCTGGTTATTGGTCTCTCAGTTCCCTTTTTTGGTCTGGTGATGTCATTGATTGGATCATTACTCACCATGCTTGTTACTTTGATACTACCCTGTGTTTGTTTCCTAAGAATCTTGCGGGGCAAAGTGACACGAATACAGGCAGCACTTTGCATTACAATCATCACAGTAGGTGTTGTATGTTCTGGTATTGGAACATACTCTGCCCTTGTCGAGATTGTGAAGAGTTTGAGGGGATGA 1638 0.428 MNNSVSDHSFIIESDEEEEEKEFNKGGDDGNDSDSSNYSNENPPQRKPSSYNMSWPQSYRQSIDLYSSVPSPNIGFLGTPSLSRLSSSFLSTSLTRRHTPEALPSVTKPLIQPSEEEEQHQRRSSHTLLPPLSSRRSSIKKDSKVAAHHEVPSRHCSYGQAVLNGINVLCGVGILSTPYAAKEGGWIGLSVLLIFAIISFYTGLLLRSCLDSEPELETYPDIGQAAFGTTGRIAISIVLYVELYACCIEYIILEGDNLSSLFPSAHLNLGGIGLDSRTLFAVITALAVLPTVWLRDLSVLSYISAGGVVASVLVVLCLLWVGVDDVGFQSKGTALNLATFPVAIGLYGYCYSGHAVFPNIYTSMANPNQFPAVLLACFGICTVLYAGAAVMGYTMFGEAILSQFTLNLPQELVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSNHAKSYLYSIFIRTGLVLSTLVIGLSVPFFGLVMSLIGSLLTMLVTLILPCVCFLRILRGKVTRIQAALCITIITVGVVCSGIGTYSALVEIVKSLRG 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02006 545 MobiDBLite consensus disorder prediction 96 147 - -
Cca02g02006 545 Pfam Transmembrane amino acid transporter protein 157 534 IPR013057 -
Cca02g02006 545 PANTHER OS05G0424000 PROTEIN-RELATED 26 542 - -
Cca02g02006 545 MobiDBLite consensus disorder prediction 1 55 - -
Cca02g02006 545 MobiDBLite consensus disorder prediction 30 55 - -
Cca02g02006 545 PANTHER - 26 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02006 Cca-Chr2 39916668 39929844 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02006 1 478 Amino Acid or Auxin Permease AAAP Family AT2G39130 71.074 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02006 K15015 - gmx:100810530 907.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02006 02 39916668 39929844 Cca02g02006 02 39916668 39929844 ECH